MGE detailed information
MGE type: Genomic_island MGE length: 11792 bp
Accession: NZ_CP051719 Location: 3571249..3583040 Organism: Escherichia coli strain SCU-116 Replicon: chromosome
Accession: NZ_CP051719 Location: 3571249..3583040 Organism: Escherichia coli strain SCU-116 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ31_RS17040 () | 3566940..3568253 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| HHJ31_RS17045 () | 3568265..3568543 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| HHJ31_RS17050 () | 3568540..3569661 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| HHJ31_RS25025 () | 3569906..3570022 | - | 117 | Protein_3322 | VOC family protein | - |
| HHJ31_RS17055 () | 3570060..3570278 | - | 219 | Protein_3323 | hypothetical protein | - |
| HHJ31_RS17060 () | 3570447..3571193 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| HHJ31_RS17065 () | 3571249..3571794 | - | 546 | WP_001350781.1 | N-acetyltransferase | Antitoxin Detail |
| HHJ31_RS17070 () | 3571806..3572063 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| HHJ31_RS17075 () | 3572440..3572685 | - | 246 | Protein_3327 | GNAT family N-acetyltransferase | - |
| HHJ31_RS17080 () | 3572801..3574041 | + | 1241 | Protein_3328 | helicase YjhR | - |
| HHJ31_RS17085 () | 3574624..3575604 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| HHJ31_RS17090 () | 3575669..3576775 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| HHJ31_RS17095 () | 3576795..3577511 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| HHJ31_RS17100 () | 3578967..3579569 | + | 603 | WP_000790583.1 | hypothetical protein | VF |
| HHJ31_RS17105 () | 3580047..3580643 | + | 597 | WP_000044711.1 | hypothetical protein | VF |
| HHJ31_RS17110 () | 3581126..3581674 | + | 549 | WP_000695592.1 | hypothetical protein | VF |
| HHJ31_RS17115 () | 3581739..3582278 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| HHJ31_RS17120 () | 3582315..3583040 | + | 726 | WP_000066560.1 | hypothetical protein | VF |
| HHJ31_RS17125 () | 3583107..3585743 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| HHJ31_RS17130 () | 3585753..3586283 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| HHJ31_RS17135 () | 3586296..3586799 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| HHJ31_RS17140 () | 3586819..3587721 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |