MGE detailed information
MGE type: Genomic_island MGE length: 11028 bp
Accession: NZ_CP103718 Location: 4348161..4359188 Organism: Escherichia coli strain 1579 Replicon: chromosome
Accession: NZ_CP103718 Location: 4348161..4359188 Organism: Escherichia coli strain 1579 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S87_RS20900 (4343640) | 4343640..4344143 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| M5S87_RS20905 (4344156) | 4344156..4344686 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| M5S87_RS20910 (4344696) | 4344696..4347332 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| M5S87_RS20915 (4347399) | 4347399..4348124 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| M5S87_RS20920 (4348161) | 4348161..4348700 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| M5S87_RS20925 (4348765) | 4348765..4349313 | - | 549 | WP_000695557.1 | hypothetical protein | VF |
| M5S87_RS20930 (4349794) | 4349794..4350390 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| M5S87_RS20935 (4350868) | 4350868..4351470 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| M5S87_RS20940 (4352926) | 4352926..4353642 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| M5S87_RS20945 (4353662) | 4353662..4354768 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| M5S87_RS20950 (4354833) | 4354833..4355813 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| M5S87_RS20955 (4355923) | 4355923..4356128 | + | 206 | Protein_4100 | HNH endonuclease | - |
| M5S87_RS20960 (4356396) | 4356396..4357636 | - | 1241 | Protein_4101 | helicase YjhR | - |
| M5S87_RS20965 (4357752) | 4357752..4357883 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| M5S87_RS20970 (4358374) | 4358374..4358631 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| M5S87_RS20975 (4358643) | 4358643..4359188 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| M5S87_RS20980 (4359244) | 4359244..4359990 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| M5S87_RS20985 (4360159) | 4360159..4360377 | + | 219 | Protein_4106 | hypothetical protein | - |
| M5S87_RS20990 (4360415) | 4360415..4360531 | + | 117 | Protein_4107 | VOC family protein | - |
| M5S87_RS20995 (4360776) | 4360776..4361897 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| M5S87_RS21000 (4361894) | 4361894..4362172 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| M5S87_RS21005 (4362184) | 4362184..4363497 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |