MGE detailed information
MGE type: Genomic_island MGE length: 11793 bp
Accession: NZ_CP087564 Location: 3894246..3906038 Organism: Escherichia coli strain CM2010-0578/1 Replicon: chromosome
Accession: NZ_CP087564 Location: 3894246..3906038 Organism: Escherichia coli strain CM2010-0578/1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOF66_RS19470 (3889937) | 3889937..3891250 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| LOF66_RS19475 (3891262) | 3891262..3891540 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LOF66_RS19480 (3891537) | 3891537..3892658 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| LOF66_RS19485 (3892903) | 3892903..3893019 | - | 117 | Protein_3804 | VOC family protein | - |
| LOF66_RS19490 (3893057) | 3893057..3893275 | - | 219 | Protein_3805 | hypothetical protein | - |
| LOF66_RS19495 (3893444) | 3893444..3894190 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LOF66_RS19500 (3894246) | 3894246..3894791 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| LOF66_RS19505 (3894803) | 3894803..3895060 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LOF66_RS19510 (3895551) | 3895551..3895682 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| LOF66_RS19515 (3895798) | 3895798..3897038 | + | 1241 | Protein_3810 | helicase YjhR | - |
| LOF66_RS19520 (3897306) | 3897306..3897511 | - | 206 | Protein_3811 | HNH endonuclease | - |
| LOF66_RS19525 (3897621) | 3897621..3898601 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LOF66_RS19530 (3898666) | 3898666..3899772 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| LOF66_RS19535 (3899792) | 3899792..3900508 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LOF66_RS19540 (3901965) | 3901965..3902567 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| LOF66_RS19545 (3903047) | 3903047..3903679 | + | 633 | WP_274480377.1 | Tyrosine recombinase XerD | VF |
| LOF66_RS19550 (3904124) | 3904124..3904672 | + | 549 | WP_001572544.1 | Type-1 fimbrial protein, A chain | VF |
| LOF66_RS19555 (3904737) | 3904737..3905276 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| LOF66_RS19560 (3905313) | 3905313..3906038 | + | 726 | WP_001572545.1 | Chaperone protein FimC | VF |
| LOF66_RS19565 (3906105) | 3906105..3908741 | + | 2637 | WP_001572546.1 | fimbrial usher FimD | - |
| LOF66_RS19570 (3908751) | 3908751..3909281 | + | 531 | WP_001244838.1 | type 1 fimbria minor subunit FimF | - |
| LOF66_RS19575 (3909294) | 3909294..3909797 | + | 504 | WP_000872005.1 | type 1 fimbria minor subunit FimG | - |
| LOF66_RS19580 (3909817) | 3909817..3910719 | + | 903 | WP_137525543.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.01 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.01 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.007 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.01 |