MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP077969 Location: 4448254..4460044 Organism: Escherichia coli strain JM83 Replicon: chromosome
Accession: NZ_CP077969 Location: 4448254..4460044 Organism: Escherichia coli strain JM83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTJ86_RS21460 (4443945) | 4443945..4445258 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| KTJ86_RS21465 (4445270) | 4445270..4445548 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| KTJ86_RS21470 (4445545) | 4445545..4446666 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| KTJ86_RS21475 (4446911) | 4446911..4447027 | - | 117 | Protein_4187 | VOC family protein | - |
| KTJ86_RS21480 (4447065) | 4447065..4447283 | - | 219 | Protein_4188 | hypothetical protein | - |
| KTJ86_RS21485 (4447452) | 4447452..4448198 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| KTJ86_RS21490 (4448254) | 4448254..4448799 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| KTJ86_RS21495 (4448811) | 4448811..4449068 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| KTJ86_RS22100 (4449559) | 4449559..4449690 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| KTJ86_RS21505 (4449806) | 4449806..4451046 | + | 1241 | Protein_4193 | helicase YjhR | - |
| KTJ86_RS22105 (4451314) | 4451314..4451519 | - | 206 | Protein_4194 | HNH endonuclease | - |
| KTJ86_RS21510 (4451629) | 4451629..4452609 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| KTJ86_RS21515 (4452674) | 4452674..4453780 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| KTJ86_RS21520 (4453800) | 4453800..4454516 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| KTJ86_RS21525 (4455972) | 4455972..4456574 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| KTJ86_RS21530 (4457052) | 4457052..4457648 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| KTJ86_RS21535 (4458130) | 4458130..4458678 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| KTJ86_RS21540 (4458743) | 4458743..4459282 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| KTJ86_RS21545 (4459319) | 4459319..4460044 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| KTJ86_RS21550 (4460111) | 4460111..4462747 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| KTJ86_RS21555 (4462757) | 4462757..4463287 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| KTJ86_RS21560 (4463300) | 4463300..4463803 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| KTJ86_RS21565 (4463823) | 4463823..4464725 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |