MGE detailed information
MGE type: Genomic_island MGE length: 13130 bp
Accession: NZ_CP102379 Location: 4409021..4422150 Organism: Escherichia coli strain BM28 lysU Replicon: chromosome
Accession: NZ_CP102379 Location: 4409021..4422150 Organism: Escherichia coli strain BM28 lysU Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR350_RS21345 (4404712) | 4404712..4406025 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| NR350_RS21350 (4406037) | 4406037..4406315 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| NR350_RS21355 (4406312) | 4406312..4407433 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| NR350_RS21360 (4407678) | 4407678..4407794 | - | 117 | Protein_4153 | VOC family protein | - |
| NR350_RS21365 (4407832) | 4407832..4408050 | - | 219 | Protein_4154 | hypothetical protein | - |
| NR350_RS21370 (4408219) | 4408219..4408965 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| NR350_RS21375 (4409021) | 4409021..4409566 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| NR350_RS21380 (4409578) | 4409578..4409835 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| NR350_RS21385 (4410326) | 4410326..4410457 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| NR350_RS21390 (4410573) | 4410573..4411813 | + | 1241 | Protein_4159 | helicase YjhR | - |
| NR350_RS21395 (4412081) | 4412081..4412286 | - | 206 | Protein_4160 | HNH endonuclease | - |
| NR350_RS21400 (4412396) | 4412396..4413376 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| NR350_RS21405 (4413441) | 4413441..4414547 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| NR350_RS21410 (4414567) | 4414567..4415283 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| NR350_RS21415 (4416740) | 4416740..4417342 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| NR350_RS21420 (4417820) | 4417820..4418332 | + | 513 | WP_095841900.1 | Tyrosine recombinase XerD | VF |
| NR350_RS21425 (4418436) | 4418436..4419644 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| NR350_RS21430 (4419659) | 4419659..4419754 | + | 96 | Protein_4167 | tyrosine recombinase | - |
| NR350_RS21435 (4420236) | 4420236..4420784 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| NR350_RS21440 (4420849) | 4420849..4421388 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| NR350_RS21445 (4421425) | 4421425..4422150 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| NR350_RS21450 (4422217) | 4422217..4424853 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| NR350_RS21455 (4424863) | 4424863..4425393 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| NR350_RS21460 (4425406) | 4425406..4425909 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| NR350_RS21465 (4425929) | 4425929..4426831 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |