MGE detailed information
MGE type: Genomic_island MGE length: 11792 bp
Accession: NZ_CP026491 Location: 3590775..3602566 Organism: Escherichia coli strain HS13-1 Replicon: chromosome
Accession: NZ_CP026491 Location: 3590775..3602566 Organism: Escherichia coli strain HS13-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3K24_RS18555 () | 3586466..3587779 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| C3K24_RS18560 () | 3587791..3588069 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| C3K24_RS18565 () | 3588066..3589187 | - | 1122 | WP_000010832.1 | M42 family metallopeptidase | - |
| C3K24_RS29515 () | 3589432..3589548 | - | 117 | Protein_3407 | VOC family protein | - |
| C3K24_RS18570 () | 3589586..3589804 | - | 219 | Protein_3408 | hypothetical protein | - |
| C3K24_RS18575 () | 3589973..3590719 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| C3K24_RS18580 () | 3590775..3591320 | - | 546 | WP_001350781.1 | N-acetyltransferase | Antitoxin Detail |
| C3K24_RS18585 () | 3591332..3591589 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| C3K24_RS18595 () | 3591966..3592211 | - | 246 | Protein_3412 | GNAT family N-acetyltransferase | - |
| C3K24_RS18605 () | 3592327..3593567 | + | 1241 | Protein_3413 | helicase YjhR | - |
| C3K24_RS18610 () | 3594150..3595130 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| C3K24_RS18615 () | 3595195..3596301 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| C3K24_RS18620 () | 3596321..3597037 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| C3K24_RS18635 () | 3598493..3599095 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| C3K24_RS18640 () | 3599573..3600169 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| C3K24_RS18650 () | 3600652..3601200 | + | 549 | WP_000695592.1 | hypothetical protein | VF |
| C3K24_RS18655 () | 3601265..3601804 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| C3K24_RS18660 () | 3601841..3602566 | + | 726 | WP_000066560.1 | hypothetical protein | VF |
| C3K24_RS18665 () | 3602633..3605269 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| C3K24_RS18670 () | 3605279..3605809 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| C3K24_RS18675 () | 3605822..3606325 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| C3K24_RS18680 () | 3606345..3607247 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |