Detailed information of TA system TA094988

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yjhX-yjhQ/YjhX(toxin)
• Location: 3590775..3591589
• Replicon: chromosome
• Accession: NZ_CP026491
• Organism: Escherichia coli strain HS13-1

Toxin (Protein)

• Gene name: yjhX
• Uniprot ID: S1PA82
• Locus tag: C3K24_RS18585
• Protein ID: WP_001054376.1
• Coordinates: 3591332..3591589 (-)
• Length: 86 a.a.

Antitoxin (Protein)

• Gene name: yjhQ
• Uniprot ID: A0A8E0IVE5
• Locus tag: C3K24_RS18580
• Protein ID: WP_001350781.1
• Coordinates: 3590775..3591320 (-)
• Length: 182 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C3K24_RS18555	3586466..3587779	-	1314	WP_000460843.1	galactitol-specific PTS transporter subunit IIC	-
C3K24_RS18560	3587791..3588069	-	279	WP_000722973.1	PTS sugar transporter subunit IIB	-
C3K24_RS18565	3588066..3589187	-	1122	WP_000010832.1	M42 family metallopeptidase	-
C3K24_RS29515	3589432..3589548	-	117	Protein_3407	VOC family protein	-
C3K24_RS18570	3589586..3589804	-	219	Protein_3408	hypothetical protein	-
C3K24_RS18575	3589973..3590719	-	747	WP_000354251.1	class I SAM-dependent methyltransferase	-
C3K24_RS18580	3590775..3591320	-	546	WP_001350781.1	N-acetyltransferase	Antitoxin
C3K24_RS18585	3591332..3591589	-	258	WP_001054376.1	hypothetical protein	Toxin
C3K24_RS18595	3591966..3592211	-	246	Protein_3412	GNAT family N-acetyltransferase	-
C3K24_RS18605	3592327..3593567	+	1241	Protein_3413	helicase YjhR	-
C3K24_RS18610	3594150..3595130	-	981	WP_000991438.1	9-O-acetyl-N-acetylneuraminic acid deacetylase	-
C3K24_RS18615	3595195..3596301	-	1107	WP_001309184.1	N-acetylneuraminate epimerase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View HG738867 Escherichia coli str. K-12 substr. MC4100 Genomic island TA020089 4419085..4430625 0.005 View NC_000913 Escherichia coli str. K-12 substr. MG1655 Genomic island TA006279 4533239..4545029 0.001 View NC_007779 Escherichia coli str. K-12 substr. W3110 Genomic island TA021460 4537919..4549709 0.001 View NC_012759 Escherichia coli BW2952 Genomic island TA023876 4469997..4481537 0.005 View NC_017638 Escherichia coli DH1 Genomic island TA027426 4513009..4524807 0.001 View NZ_CP009273 Escherichia coli BW25113 Genomic island TA048705 4523056..4534846 0.001 View NZ_CP017979 Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 Genomic island TA068445 4432698..4444488 0.001 View NZ_HG738867 Escherichia coli str. K-12 substr. MC4100 strain K-12 Genomic island TA285034 4419085..4430625 0.005	inside	Genomic island	-	fimB / fimE / fimA / fimI / fimC	3590775..3602566	11791

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Putative toxin of bacterial toxin-antitoxin pair (1-85)

Antitoxin

• GNAT domain (18-121)

Sequences

Toxin

Protein

• Length: 86 a.a.
• Molecular weight: 9734.29 Da
• Isoelectric Point: 11.0090

>T94988 WP_001054376.1 NZ_CP026491:c3591589-3591332 [Escherichia coli]
MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRA
QLDNR

Nucleotide

• Length: 258 bp

>T94988 NZ_CP026491:c3591589-3591332 [Escherichia coli]
ATGAATTTATCCCGTCAGGAACAACATACCTTACACGTTCTCGCTAAAGGTAGACGTATTGCGCACGTCCGCGATTCTTC
AGGCCGCGTCACTTCCGTTGAATGCTACAGCCGCGAAGGGCTGTTGCTGACCGACTGCACGCTCGCCGTCTTCAAAAAAC
TCAAAACCAAAAAACTTATCAAGTCCGTCAATGGCCAGCCCTATCGAATCAACACCACCGAGCTGAATAAAGTTCGCGCT
CAGCTCGATAATCGCTAA

Antitoxin

Protein

• Length: 182 a.a.
• Molecular weight: 19974.91 Da
• Isoelectric Point: 6.3277

>AT94988 WP_001350781.1 NZ_CP026491:c3591320-3590775 [Escherichia coli]
MTVHHFTFHITDKSDASDIREVETRAFGFGKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMH
ILAPLAFIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTA
QPMTLTGHIRCADPDETGALT

Nucleotide

• Length: 546 bp

>AT94988 NZ_CP026491:c3591320-3590775 [Escherichia coli]
ATGACAGTACACCACTTCACTTTTCATATCACAGATAAAAGTGATGCCAGTGATATCCGGGAAGTCGAAACCCGCGCATT
TGGCTTCGGCAAAGAAGCCGATTTAGTGGCCTCTTTACTTGAGGATGAAAGCGCGCGCCCCGCGTTATCGCTGCTAGCCC
GGTATGAAGGCAAAGCCGTCGGGCATATTTTATTTACCCGGGCAACCTTCAAAGGAGAAATGGATTCACCGTTGATGCAC
ATCCTCGCTCCCCTGGCTTTCATACCGGAATACCAAGGGATGGGCGTGGGAGGACGGTTGATACGCACTGGCATCGAGCA
CCTGAGGTTGATGGGCTGCCAGACGGTTTTTGTTCTCGGCCACGCCACCTATTACCCCCGACATGGGTTCGAACCCTGTG
CCGGAGACAAAGGCTATCCGGCACCTTATCCCATCCCGGAGGAGCACAAAGCCTGCTGGATGATGCAATCACTCACCGCT
CAGCCCATGACCCTGACCGGCCACATCCGGTGCGCAGACCCTGATGAAACCGGAGCACTGACGTGA

Structures

Toxin

• AlphaFold DB: S1PA82