MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP116115 Location: 575407..587197 Organism: Escherichia coli strain DETEC-P793 Replicon: chromosome
Accession: NZ_CP116115 Location: 575407..587197 Organism: Escherichia coli strain DETEC-P793 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC92_RS02750 (571098) | 571098..572411 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| PIC92_RS02755 (572423) | 572423..572701 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| PIC92_RS02760 (572698) | 572698..573819 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| PIC92_RS02765 (574064) | 574064..574180 | - | 117 | Protein_535 | VOC family protein | - |
| PIC92_RS02770 (574218) | 574218..574436 | - | 219 | Protein_536 | hypothetical protein | - |
| PIC92_RS02775 (574605) | 574605..575351 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| PIC92_RS02780 (575407) | 575407..575952 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| PIC92_RS02785 (575964) | 575964..576221 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| PIC92_RS02790 (576712) | 576712..576843 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| PIC92_RS02795 (576959) | 576959..578199 | + | 1241 | Protein_541 | helicase YjhR | - |
| PIC92_RS02800 (578467) | 578467..578672 | - | 206 | Protein_542 | HNH endonuclease | - |
| PIC92_RS02805 (578782) | 578782..579762 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| PIC92_RS02810 (579827) | 579827..580933 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| PIC92_RS02815 (580953) | 580953..581669 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| PIC92_RS02820 (583125) | 583125..583727 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| PIC92_RS02825 (584205) | 584205..584801 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| PIC92_RS02830 (585283) | 585283..585831 | + | 549 | WP_001774144.1 | Type-1 fimbrial protein, A chain | VF |
| PIC92_RS02835 (585896) | 585896..586435 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| PIC92_RS02840 (586472) | 586472..587197 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| PIC92_RS02845 (587264) | 587264..589900 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| PIC92_RS02850 (589910) | 589910..590440 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| PIC92_RS02855 (590453) | 590453..590956 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| PIC92_RS02860 (590976) | 590976..591878 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |