MGE detailed information
MGE type: Genomic_island MGE length: 11790 bp
Accession: NZ_CP025268 Location: 4535154..4546943 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Accession: NZ_CP025268 Location: 4535154..4546943 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXP41_RS23465 () | 4530845..4532158 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| CXP41_RS23470 () | 4532170..4532448 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| CXP41_RS23475 () | 4532445..4533566 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| CXP41_RS24410 () | 4533811..4533927 | - | 117 | Protein_4281 | VOC family protein | - |
| CXP41_RS23480 () | 4533965..4534183 | - | 219 | Protein_4282 | hypothetical protein | - |
| CXP41_RS23485 () | 4534352..4535098 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| CXP41_RS23490 () | 4535154..4535699 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| CXP41_RS23495 () | 4535711..4535968 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| CXP41_RS23505 () | 4536345..4536590 | - | 246 | Protein_4286 | GNAT family N-acetyltransferase | - |
| CXP41_RS23515 () | 4536706..4537946 | + | 1241 | Protein_4287 | helicase YjhR | - |
| CXP41_RS23520 () | 4538529..4539509 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| CXP41_RS23525 () | 4539574..4540680 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| CXP41_RS23530 () | 4540700..4541416 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| CXP41_RS23545 () | 4542907..4543473 | + | 567 | WP_032162589.1 | type 1 fimbria switch DNA invertase FimB | - |
| CXP41_RS23550 () | 4543951..4544547 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| CXP41_RS23560 () | 4545029..4545577 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| CXP41_RS23565 () | 4545642..4546181 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| CXP41_RS23570 () | 4546218..4546943 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| CXP41_RS23575 () | 4547010..4549646 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| CXP41_RS23580 () | 4549656..4550186 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| CXP41_RS23585 () | 4550199..4550702 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| CXP41_RS23590 () | 4550722..4551624 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |