MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP083410 Location: 4533103..4544893 Organism: Escherichia coli strain RP437 Replicon: chromosome
Accession: NZ_CP083410 Location: 4533103..4544893 Organism: Escherichia coli strain RP437 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ62_RS21965 (4528794) | 4528794..4530107 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| LAJ62_RS21970 (4530119) | 4530119..4530397 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LAJ62_RS21975 (4530394) | 4530394..4531515 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| LAJ62_RS21980 (4531760) | 4531760..4531876 | - | 117 | Protein_4280 | VOC family protein | - |
| LAJ62_RS21985 (4531914) | 4531914..4532132 | - | 219 | Protein_4281 | hypothetical protein | - |
| LAJ62_RS21990 (4532301) | 4532301..4533047 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LAJ62_RS21995 (4533103) | 4533103..4533648 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| LAJ62_RS22000 (4533660) | 4533660..4533917 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LAJ62_RS22005 (4534408) | 4534408..4534539 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| LAJ62_RS22010 (4534655) | 4534655..4535895 | + | 1241 | Protein_4286 | helicase YjhR | - |
| LAJ62_RS22015 (4536163) | 4536163..4536368 | - | 206 | Protein_4287 | HNH endonuclease | - |
| LAJ62_RS22020 (4536478) | 4536478..4537458 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LAJ62_RS22025 (4537523) | 4537523..4538629 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| LAJ62_RS22030 (4538649) | 4538649..4539365 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LAJ62_RS22035 (4540821) | 4540821..4541423 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| LAJ62_RS22040 (4541901) | 4541901..4542497 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| LAJ62_RS22045 (4542979) | 4542979..4543527 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| LAJ62_RS22050 (4543592) | 4543592..4544131 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| LAJ62_RS22055 (4544168) | 4544168..4544893 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| LAJ62_RS22060 (4544960) | 4544960..4547596 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| LAJ62_RS22065 (4547606) | 4547606..4548136 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| LAJ62_RS22070 (4548149) | 4548149..4548652 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| LAJ62_RS22075 (4548672) | 4548672..4549574 | + | 903 | WP_133412472.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |