MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_LR890410 Location: 3443589..3455379 Organism: Escherichia coli isolate MSB2_1A-sc-2280429 Replicon: chromosome
Accession: NZ_LR890410 Location: 3443589..3455379 Organism: Escherichia coli isolate MSB2_1A-sc-2280429 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW04_RS16315 () | 3439280..3440593 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| JMW04_RS16320 () | 3440605..3440883 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| JMW04_RS16325 () | 3440880..3442001 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| JMW04_RS16330 () | 3442246..3442362 | - | 117 | Protein_3186 | VOC family protein | - |
| JMW04_RS16335 () | 3442400..3442618 | - | 219 | Protein_3187 | hypothetical protein | - |
| JMW04_RS16340 () | 3442787..3443533 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| JMW04_RS16345 () | 3443589..3444134 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| JMW04_RS16350 () | 3444146..3444403 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| JMW04_RS16355 () | 3444780..3445025 | - | 246 | Protein_3191 | GNAT family N-acetyltransferase | - |
| JMW04_RS16360 () | 3445141..3446381 | + | 1241 | Protein_3192 | DNA helicase | - |
| JMW04_RS16365 () | 3446964..3447944 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JMW04_RS16370 () | 3448009..3449115 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| JMW04_RS16375 () | 3449135..3449851 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| JMW04_RS16380 () | 3451307..3451909 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| JMW04_RS16385 () | 3452387..3452983 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| JMW04_RS16390 () | 3453465..3454013 | + | 549 | WP_001774144.1 | Type-1 fimbrial protein, A chain | VF |
| JMW04_RS16395 () | 3454078..3454617 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| JMW04_RS16400 () | 3454654..3455379 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| JMW04_RS16405 () | 3455446..3458082 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| JMW04_RS16410 () | 3458092..3458622 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| JMW04_RS16415 () | 3458635..3459138 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| JMW04_RS16420 () | 3459158..3460060 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |