MGE detailed information
MGE type: Genomic_island MGE length: 11792 bp
Accession: NZ_CP025401 Location: 5077482..5089273 Organism: Escherichia coli strain MS8345 Replicon: chromosome
Accession: NZ_CP025401 Location: 5077482..5089273 Organism: Escherichia coli strain MS8345 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS8345_RS26560 () | 5073173..5074486 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| MS8345_RS26565 () | 5074498..5074776 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| MS8345_RS26570 () | 5074773..5075894 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| MS8345_RS30155 () | 5076139..5076255 | - | 117 | Protein_4872 | VOC family protein | - |
| MS8345_RS26575 () | 5076293..5076511 | - | 219 | Protein_4873 | hypothetical protein | - |
| MS8345_RS26580 () | 5076680..5077426 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| MS8345_RS26585 () | 5077482..5078027 | - | 546 | WP_001350781.1 | N-acetyltransferase | Antitoxin Detail |
| MS8345_RS26590 () | 5078039..5078296 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| MS8345_RS26600 () | 5078673..5078918 | - | 246 | Protein_4877 | GNAT family N-acetyltransferase | - |
| MS8345_RS26610 () | 5079034..5080274 | + | 1241 | Protein_4878 | helicase YjhR | - |
| MS8345_RS26615 () | 5080857..5081837 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| MS8345_RS26620 () | 5081902..5083008 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| MS8345_RS26625 () | 5083028..5083744 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| MS8345_RS26640 () | 5085200..5085802 | + | 603 | WP_083574978.1 | Tyrosine recombinase XerC | VF |
| MS8345_RS26645 () | 5086280..5086876 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| MS8345_RS26655 () | 5087359..5087907 | + | 549 | WP_000695592.1 | Type-1 fimbrial protein, A chain | VF |
| MS8345_RS26660 () | 5087972..5088511 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| MS8345_RS26665 () | 5088548..5089273 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| MS8345_RS26670 () | 5089340..5091976 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| MS8345_RS26675 () | 5091986..5092516 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| MS8345_RS26680 () | 5092529..5093032 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| MS8345_RS26685 () | 5093052..5093954 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |