MGE detailed information
MGE type: Genomic_island MGE length: 11790 bp
Accession: NZ_CP068281 Location: 1100073..1111862 Organism: Escherichia coli strain CY706 Replicon: chromosome
Accession: NZ_CP068281 Location: 1100073..1111862 Organism: Escherichia coli strain CY706 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW04_RS05215 (1095764) | 1095764..1097077 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| JJW04_RS05220 (1097089) | 1097089..1097367 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| JJW04_RS05225 (1097364) | 1097364..1098485 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| JJW04_RS05230 (1098730) | 1098730..1098846 | - | 117 | Protein_1012 | VOC family protein | - |
| JJW04_RS05235 (1098884) | 1098884..1099102 | - | 219 | Protein_1013 | hypothetical protein | - |
| JJW04_RS05240 (1099271) | 1099271..1100017 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| JJW04_RS05245 (1100073) | 1100073..1100618 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| JJW04_RS05250 (1100630) | 1100630..1100887 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| JJW04_RS23165 (1101378) | 1101378..1101509 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| JJW04_RS05260 (1101625) | 1101625..1102865 | + | 1241 | Protein_1018 | helicase YjhR | - |
| JJW04_RS23170 (1103133) | 1103133..1103338 | - | 206 | Protein_1019 | HNH endonuclease | - |
| JJW04_RS05265 (1103448) | 1103448..1104428 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JJW04_RS05270 (1104493) | 1104493..1105599 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| JJW04_RS05275 (1105619) | 1105619..1106335 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| JJW04_RS05280 (1107791) | 1107791..1108393 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| JJW04_RS05285 (1108871) | 1108871..1109467 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| JJW04_RS05290 (1109948) | 1109948..1110496 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| JJW04_RS05295 (1110561) | 1110561..1111100 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| JJW04_RS05300 (1111137) | 1111137..1111862 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| JJW04_RS05305 (1111929) | 1111929..1114565 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| JJW04_RS05310 (1114575) | 1114575..1115105 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| JJW04_RS05315 (1115118) | 1115118..1115621 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| JJW04_RS05320 (1115641) | 1115641..1116543 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |