MGE detailed information
MGE type: Genomic_island MGE length: 11800 bp
Accession: NZ_CP012126 Location: 4503941..4515740 Organism: Escherichia coli strain DH1Ec104 Replicon: chromosome
Accession: NZ_CP012126 Location: 4503941..4515740 Organism: Escherichia coli strain DH1Ec104 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADZ27_RS22135 () | 4499632..4500945 | - | 1314 | WP_000460842.1 | galactitol-specific PTS transporter subunit IIC | - |
| ADZ27_RS22140 () | 4500957..4501235 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| ADZ27_RS22145 () | 4501232..4502353 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| ADZ27_RS25720 () | 4502598..4502714 | - | 117 | Protein_4205 | VOC family protein | - |
| ADZ27_RS25115 () | 4502752..4502970 | - | 219 | Protein_4206 | hypothetical protein | - |
| ADZ27_RS22150 () | 4503139..4503885 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| ADZ27_RS22155 () | 4503941..4504486 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| ADZ27_RS22160 () | 4504498..4504755 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| ADZ27_RS25570 () | 4505132..4505377 | - | 246 | Protein_4210 | GNAT family N-acetyltransferase | - |
| ADZ27_RS22175 () | 4505493..4506733 | + | 1241 | Protein_4211 | helicase YjhR | - |
| ADZ27_RS22180 () | 4507316..4508296 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| ADZ27_RS22185 () | 4508361..4509467 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| ADZ27_RS22190 () | 4509487..4510203 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| ADZ27_RS22205 () | 4511659..4512261 | + | 603 | WP_000790589.1 | Tyrosine recombinase XerC | VF |
| ADZ27_RS22210 () | 4512790..4513344 | + | 555 | WP_000983104.1 | Tyrosine recombinase XerD | VF |
| ADZ27_RS22220 () | 4513826..4514374 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| ADZ27_RS22225 () | 4514439..4514978 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| ADZ27_RS22230 () | 4515015..4515740 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| ADZ27_RS22235 () | 4515807..4518443 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| ADZ27_RS22240 () | 4518453..4518983 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| ADZ27_RS22245 () | 4518996..4519499 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| ADZ27_RS22250 () | 4519519..4520421 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |