MGE detailed information
MGE type: Genomic_island MGE length: 11541 bp
Accession: NZ_CP072054 Location: 4418584..4430124 Organism: Escherichia coli strain K1508 Replicon: chromosome
Accession: NZ_CP072054 Location: 4418584..4430124 Organism: Escherichia coli strain K1508 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5N95_RS21215 (4414275) | 4414275..4415588 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| J5N95_RS21220 (4415600) | 4415600..4415878 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| J5N95_RS21225 (4415875) | 4415875..4416996 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| J5N95_RS21230 (4417241) | 4417241..4417357 | - | 117 | Protein_4181 | VOC family protein | - |
| J5N95_RS21235 (4417395) | 4417395..4417613 | - | 219 | Protein_4182 | hypothetical protein | - |
| J5N95_RS21240 (4417782) | 4417782..4418528 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| J5N95_RS21245 (4418584) | 4418584..4419129 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| J5N95_RS21250 (4419141) | 4419141..4419398 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| J5N95_RS21975 (4419889) | 4419889..4420020 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| J5N95_RS21260 (4420136) | 4420136..4421376 | + | 1241 | Protein_4187 | helicase YjhR | - |
| J5N95_RS21980 (4421644) | 4421644..4421849 | - | 206 | Protein_4188 | HNH endonuclease | - |
| J5N95_RS21265 (4421959) | 4421959..4422939 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| J5N95_RS21270 (4423004) | 4423004..4424110 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| J5N95_RS21275 (4424130) | 4424130..4424846 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| J5N95_RS21280 (4426302) | 4426302..4426370 | + | 69 | Protein_4192 | integrase | - |
| J5N95_RS21285 (4426424) | 4426424..4427121 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| J5N95_RS21290 (4427174) | 4427174..4427728 | + | 555 | WP_000983104.1 | Tyrosine recombinase XerD | VF |
| J5N95_RS21295 (4428210) | 4428210..4428758 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| J5N95_RS21300 (4428823) | 4428823..4429362 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| J5N95_RS21305 (4429399) | 4429399..4430124 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| J5N95_RS21310 (4430191) | 4430191..4432827 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| J5N95_RS21315 (4432837) | 4432837..4433367 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| J5N95_RS21320 (4433380) | 4433380..4433883 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| J5N95_RS21325 (4433903) | 4433903..4434805 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0 |