MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP102378 Location: 4543875..4555665 Organism: Escherichia coli strain JB41 Replicon: chromosome
Accession: NZ_CP102378 Location: 4543875..4555665 Organism: Escherichia coli strain JB41 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR351_RS22060 (4539566) | 4539566..4540879 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| NR351_RS22065 (4540891) | 4540891..4541169 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| NR351_RS22070 (4541166) | 4541166..4542287 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| NR351_RS22075 (4542532) | 4542532..4542648 | - | 117 | Protein_4295 | VOC family protein | - |
| NR351_RS22080 (4542686) | 4542686..4542904 | - | 219 | Protein_4296 | hypothetical protein | - |
| NR351_RS22085 (4543073) | 4543073..4543819 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| NR351_RS22090 (4543875) | 4543875..4544420 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| NR351_RS22095 (4544432) | 4544432..4544689 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| NR351_RS22100 (4545180) | 4545180..4545311 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| NR351_RS22105 (4545427) | 4545427..4546667 | + | 1241 | Protein_4301 | helicase YjhR | - |
| NR351_RS22110 (4546935) | 4546935..4547140 | - | 206 | Protein_4302 | HNH endonuclease | - |
| NR351_RS22115 (4547250) | 4547250..4548230 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| NR351_RS22120 (4548295) | 4548295..4549401 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| NR351_RS22125 (4549421) | 4549421..4550137 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| NR351_RS22130 (4551593) | 4551593..4552195 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| NR351_RS22135 (4552673) | 4552673..4553269 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| NR351_RS22140 (4553751) | 4553751..4554299 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| NR351_RS22145 (4554364) | 4554364..4554903 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| NR351_RS22150 (4554940) | 4554940..4555665 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| NR351_RS22155 (4555732) | 4555732..4558368 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| NR351_RS22160 (4558378) | 4558378..4558908 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| NR351_RS22165 (4558921) | 4558921..4559424 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| NR351_RS22170 (4559444) | 4559444..4560346 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |