MGE detailed information
MGE type: Genomic_island MGE length: 12989 bp
Accession: NZ_CP053605 Location: 4421973..4434961 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Accession: NZ_CP053605 Location: 4421973..4434961 Organism: Escherichia coli strain NEB_Turbo Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO393_RS21250 () | 4417664..4418977 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| HO393_RS21255 () | 4418989..4419267 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| HO393_RS21260 () | 4419264..4420385 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| HO393_RS21265 () | 4420784..4421002 | - | 219 | Protein_4134 | hypothetical protein | - |
| HO393_RS21270 () | 4421171..4421917 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| HO393_RS21275 () | 4421973..4422518 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| HO393_RS21280 () | 4422530..4422787 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| HO393_RS21285 () | 4423164..4423409 | - | 246 | Protein_4138 | GNAT family N-acetyltransferase | - |
| HO393_RS21290 () | 4423779..4424765 | + | 987 | WP_001323209.1 | hypothetical protein | - |
| HO393_RS21295 () | 4425348..4426328 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| HO393_RS21300 () | 4426393..4427499 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| HO393_RS21305 () | 4427519..4428235 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| HO393_RS21310 () | 4429691..4430293 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| HO393_RS21315 () | 4430851..4431867 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| HO393_RS21320 () | 4431970..4432566 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| HO393_RS21325 () | 4433047..4433595 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| HO393_RS21330 () | 4433660..4434199 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| HO393_RS21335 () | 4434236..4434961 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| HO393_RS21340 () | 4435028..4437664 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| HO393_RS21345 () | 4437674..4438204 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| HO393_RS21350 () | 4438217..4438720 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| HO393_RS21355 () | 4438740..4439642 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.006 |