MGE detailed information
MGE type: Genomic_island MGE length: 13130 bp
Accession: NZ_CP102380 Location: 4410629..4423758 Organism: Escherichia coli strain BM28 Replicon: chromosome
Accession: NZ_CP102380 Location: 4410629..4423758 Organism: Escherichia coli strain BM28 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR349_RS21350 (4406320) | 4406320..4407633 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| NR349_RS21355 (4407645) | 4407645..4407923 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| NR349_RS21360 (4407920) | 4407920..4409041 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| NR349_RS21365 (4409286) | 4409286..4409402 | - | 117 | Protein_4154 | VOC family protein | - |
| NR349_RS21370 (4409440) | 4409440..4409658 | - | 219 | Protein_4155 | hypothetical protein | - |
| NR349_RS21375 (4409827) | 4409827..4410573 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| NR349_RS21380 (4410629) | 4410629..4411174 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| NR349_RS21385 (4411186) | 4411186..4411443 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| NR349_RS21390 (4411934) | 4411934..4412065 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| NR349_RS21395 (4412181) | 4412181..4413421 | + | 1241 | Protein_4160 | helicase YjhR | - |
| NR349_RS21400 (4413689) | 4413689..4413894 | - | 206 | Protein_4161 | HNH endonuclease | - |
| NR349_RS21405 (4414004) | 4414004..4414984 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| NR349_RS21410 (4415049) | 4415049..4416155 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| NR349_RS21415 (4416175) | 4416175..4416891 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| NR349_RS21420 (4418348) | 4418348..4418950 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| NR349_RS21425 (4419428) | 4419428..4419940 | + | 513 | WP_095841900.1 | Tyrosine recombinase XerD | VF |
| NR349_RS21430 (4420044) | 4420044..4421252 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| NR349_RS21435 (4421267) | 4421267..4421362 | + | 96 | Protein_4168 | tyrosine recombinase | - |
| NR349_RS21440 (4421844) | 4421844..4422392 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| NR349_RS21445 (4422457) | 4422457..4422996 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| NR349_RS21450 (4423033) | 4423033..4423758 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| NR349_RS21455 (4423825) | 4423825..4426461 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| NR349_RS21460 (4426471) | 4426471..4427001 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| NR349_RS21465 (4427014) | 4427014..4427517 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| NR349_RS21470 (4427537) | 4427537..4428439 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |