MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP110996 Location: 3468430..3480220 Organism: Escherichia coli strain XYEH3783 Replicon: chromosome
Accession: NZ_CP110996 Location: 3468430..3480220 Organism: Escherichia coli strain XYEH3783 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI30_RS16690 (3464121) | 3464121..3465434 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| ORI30_RS16695 (3465446) | 3465446..3465724 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| ORI30_RS16700 (3465721) | 3465721..3466842 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| ORI30_RS16705 (3467087) | 3467087..3467203 | - | 117 | Protein_3260 | VOC family protein | - |
| ORI30_RS16710 (3467241) | 3467241..3467459 | - | 219 | Protein_3261 | hypothetical protein | - |
| ORI30_RS16715 (3467628) | 3467628..3468374 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| ORI30_RS16720 (3468430) | 3468430..3468975 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| ORI30_RS16725 (3468987) | 3468987..3469244 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| ORI30_RS16730 (3469735) | 3469735..3469866 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| ORI30_RS16735 (3469982) | 3469982..3471222 | + | 1241 | Protein_3266 | helicase YjhR | - |
| ORI30_RS16740 (3471490) | 3471490..3471695 | - | 206 | Protein_3267 | HNH endonuclease | - |
| ORI30_RS16745 (3471805) | 3471805..3472785 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| ORI30_RS16750 (3472850) | 3472850..3473956 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| ORI30_RS16755 (3473976) | 3473976..3474692 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| ORI30_RS16760 (3476148) | 3476148..3476750 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| ORI30_RS16765 (3477228) | 3477228..3477824 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| ORI30_RS16770 (3478306) | 3478306..3478854 | + | 549 | WP_001774144.1 | hypothetical protein | VF |
| ORI30_RS16775 (3478919) | 3478919..3479458 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| ORI30_RS16780 (3479495) | 3479495..3480220 | + | 726 | WP_000066560.1 | hypothetical protein | VF |
| ORI30_RS16785 (3480287) | 3480287..3482923 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| ORI30_RS16790 (3482933) | 3482933..3483463 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| ORI30_RS16795 (3483476) | 3483476..3483979 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| ORI30_RS16800 (3483999) | 3483999..3484901 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |