MGE detailed information
MGE type: Genomic_island MGE length: 11792 bp
Accession: NZ_LR740758 Location: 5013926..5025717 Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old Replicon: chromosome
Accession: NZ_LR740758 Location: 5013926..5025717 Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APEC5202_RS24350 () | 5009617..5010930 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| APEC5202_RS24355 () | 5010942..5011220 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| APEC5202_RS24360 () | 5011217..5012338 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| APEC5202_RS26880 () | 5012583..5012699 | - | 117 | Protein_4771 | VOC family protein | - |
| APEC5202_RS24365 () | 5012737..5012955 | - | 219 | Protein_4772 | hypothetical protein | - |
| APEC5202_RS24370 () | 5013124..5013870 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| APEC5202_RS24375 () | 5013926..5014471 | - | 546 | WP_001350781.1 | N-acetyltransferase | Antitoxin Detail |
| APEC5202_RS24380 () | 5014483..5014740 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| APEC5202_RS24385 () | 5015117..5015362 | - | 246 | Protein_4776 | GNAT family N-acetyltransferase | - |
| APEC5202_RS24395 () | 5015478..5016718 | + | 1241 | Protein_4777 | DNA helicase | - |
| APEC5202_RS24400 () | 5017301..5018281 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| APEC5202_RS24405 () | 5018346..5019452 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| APEC5202_RS24410 () | 5019472..5020188 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| APEC5202_RS24415 () | 5021644..5022246 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| APEC5202_RS24420 () | 5022724..5023320 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| APEC5202_RS24425 () | 5023803..5024351 | + | 549 | WP_000695592.1 | Type-1 fimbrial protein, A chain | VF |
| APEC5202_RS24430 () | 5024416..5024955 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| APEC5202_RS24435 () | 5024992..5025717 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| APEC5202_RS24440 () | 5025784..5028420 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| APEC5202_RS24445 () | 5028430..5028960 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| APEC5202_RS24450 () | 5028973..5029476 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| APEC5202_RS24455 () | 5029496..5030398 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |