MGE detailed information
MGE type: Genomic_island MGE length: 11028 bp
Accession: NZ_CP103633 Location: 4407363..4418390 Organism: Escherichia coli strain 2900 Replicon: chromosome
Accession: NZ_CP103633 Location: 4407363..4418390 Organism: Escherichia coli strain 2900 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S90_RS21130 (4402842) | 4402842..4403345 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| M5S90_RS21135 (4403358) | 4403358..4403888 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| M5S90_RS21140 (4403898) | 4403898..4406534 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| M5S90_RS21145 (4406601) | 4406601..4407326 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| M5S90_RS21150 (4407363) | 4407363..4407902 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| M5S90_RS21155 (4407967) | 4407967..4408515 | - | 549 | WP_000695557.1 | Type-1 fimbrial protein, A chain | VF |
| M5S90_RS21160 (4408996) | 4408996..4409592 | - | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| M5S90_RS21165 (4410070) | 4410070..4410672 | - | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| M5S90_RS21170 (4412128) | 4412128..4412844 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| M5S90_RS21175 (4412864) | 4412864..4413970 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| M5S90_RS21180 (4414035) | 4414035..4415015 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| M5S90_RS21185 (4415125) | 4415125..4415330 | + | 206 | Protein_4145 | HNH endonuclease | - |
| M5S90_RS21190 (4415598) | 4415598..4416838 | - | 1241 | Protein_4146 | helicase YjhR | - |
| M5S90_RS21195 (4416954) | 4416954..4417085 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| M5S90_RS21200 (4417576) | 4417576..4417833 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| M5S90_RS21205 (4417845) | 4417845..4418390 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| M5S90_RS21210 (4418446) | 4418446..4419192 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| M5S90_RS21215 (4419361) | 4419361..4419579 | + | 219 | Protein_4151 | hypothetical protein | - |
| M5S90_RS21220 (4419617) | 4419617..4419733 | + | 117 | Protein_4152 | VOC family protein | - |
| M5S90_RS21225 (4419978) | 4419978..4421099 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| M5S90_RS21230 (4421096) | 4421096..4421374 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| M5S90_RS21235 (4421386) | 4421386..4422699 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |