MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP026348 Location: 4533240..4545030 Organism: Escherichia coli strain 6FA Replicon: chromosome
Accession: NZ_CP026348 Location: 4533240..4545030 Organism: Escherichia coli strain 6FA Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2R15_RS23390 () | 4528931..4530244 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| C2R15_RS23395 () | 4530256..4530534 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| C2R15_RS23400 () | 4530531..4531652 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| C2R15_RS24380 () | 4531897..4532013 | - | 117 | Protein_4264 | VOC family protein | - |
| C2R15_RS23405 () | 4532051..4532269 | - | 219 | Protein_4265 | hypothetical protein | - |
| C2R15_RS23410 () | 4532438..4533184 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| C2R15_RS23415 () | 4533240..4533785 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| C2R15_RS23420 () | 4533797..4534054 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| C2R15_RS23430 () | 4534431..4534676 | - | 246 | Protein_4269 | GNAT family N-acetyltransferase | - |
| C2R15_RS23440 () | 4534792..4536032 | + | 1241 | Protein_4270 | helicase YjhR | - |
| C2R15_RS23445 () | 4536615..4537595 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| C2R15_RS23450 () | 4537660..4538766 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| C2R15_RS23455 () | 4538786..4539502 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| C2R15_RS23470 () | 4540958..4541560 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| C2R15_RS23475 () | 4542038..4542634 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| C2R15_RS23485 () | 4543116..4543664 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| C2R15_RS23490 () | 4543729..4544268 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| C2R15_RS23495 () | 4544305..4545030 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| C2R15_RS23500 () | 4545097..4547733 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| C2R15_RS23505 () | 4547743..4548273 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| C2R15_RS23510 () | 4548286..4548789 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| C2R15_RS23515 () | 4548809..4549711 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |