Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yjhX-yjhQ/YjhX-GNAT |
Location | 4522226..4523040 | Replicon | chromosome |
Accession | NZ_CP091065 | ||
Organism | Escherichia coli strain DOC14 |
Toxin (Protein)
Gene name | yjhX | Uniprot ID | S1PA82 |
Locus tag | L1123_RS21970 | Protein ID | WP_001054376.1 |
Coordinates | 4522783..4523040 (-) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | yjhQ | Uniprot ID | U9Z4B8 |
Locus tag | L1123_RS21965 | Protein ID | WP_001309181.1 |
Coordinates | 4522226..4522771 (-) | Length | 182 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
L1123_RS21935 (4517917) | 4517917..4519230 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
L1123_RS21940 (4519242) | 4519242..4519520 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
L1123_RS21945 (4519517) | 4519517..4520638 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
L1123_RS21950 (4520883) | 4520883..4520999 | - | 117 | Protein_4274 | VOC family protein | - |
L1123_RS21955 (4521037) | 4521037..4521255 | - | 219 | Protein_4275 | hypothetical protein | - |
L1123_RS21960 (4521424) | 4521424..4522170 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
L1123_RS21965 (4522226) | 4522226..4522771 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin |
L1123_RS21970 (4522783) | 4522783..4523040 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin |
L1123_RS21975 (4523531) | 4523531..4523662 | - | 132 | WP_001309182.1 | hypothetical protein | - |
L1123_RS21980 (4523778) | 4523778..4525018 | + | 1241 | Protein_4280 | helicase YjhR | - |
L1123_RS21985 (4525286) | 4525286..4525491 | - | 206 | Protein_4281 | HNH endonuclease | - |
L1123_RS21990 (4525601) | 4525601..4526581 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
L1123_RS21995 (4526646) | 4526646..4527752 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | fimB / fimE / fimA / fimI / fimC | 4522226..4534016 | 11790 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 9734.29 Da Isoelectric Point: 11.0090
>T232637 WP_001054376.1 NZ_CP091065:c4523040-4522783 [Escherichia coli]
MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRA
QLDNR
MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRA
QLDNR
Download Length: 258 bp
>T232637 NZ_CP127848:2025821-2025924 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 182 a.a. Molecular weight: 19956.90 Da Isoelectric Point: 6.3277
>AT232637 WP_001309181.1 NZ_CP091065:c4522771-4522226 [Escherichia coli]
MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMH
ILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTA
QPMTLTGHIRCADPDETGALT
MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMH
ILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTA
QPMTLTGHIRCADPDETGALT
Download Length: 546 bp
>AT232637 NZ_CP127848:c2025962-2025691 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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