MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP010140 Location: 365263..377053 Organism: Escherichia coli strain D3 Replicon: chromosome
Accession: NZ_CP010140 Location: 365263..377053 Organism: Escherichia coli strain D3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG36_RS01975 () | 360954..362267 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| RG36_RS01980 () | 362279..362557 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| RG36_RS01985 () | 362554..363675 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| RG36_RS29420 () | 363920..364036 | - | 117 | Protein_342 | VOC family protein | - |
| RG36_RS28055 () | 364074..364292 | - | 219 | Protein_343 | hypothetical protein | - |
| RG36_RS01995 () | 364461..365207 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| RG36_RS02000 () | 365263..365808 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| RG36_RS02005 () | 365820..366077 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| RG36_RS28650 () | 366454..366699 | - | 246 | Protein_347 | GNAT family N-acetyltransferase | - |
| RG36_RS02015 () | 366815..368055 | + | 1241 | Protein_348 | helicase YjhR | - |
| RG36_RS02025 () | 368638..369618 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| RG36_RS02030 () | 369683..370789 | - | 1107 | WP_023568191.1 | N-acetylneuraminate epimerase | - |
| RG36_RS02035 () | 370809..371525 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| RG36_RS02045 () | 372981..373583 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| RG36_RS02050 () | 374061..374657 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| RG36_RS02060 () | 375139..375687 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| RG36_RS02065 () | 375752..376291 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| RG36_RS02070 () | 376328..377053 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| RG36_RS02075 () | 377120..379756 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| RG36_RS02080 () | 379766..380296 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| RG36_RS02085 () | 380309..380812 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| RG36_RS02090 () | 380832..381734 | + | 903 | WP_069354065.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |