MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP064680 Location: 4523054..4534844 Organism: Escherichia coli K-12 strain CETR1G40 Replicon: chromosome
Accession: NZ_CP064680 Location: 4523054..4534844 Organism: Escherichia coli K-12 strain CETR1G40 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IVL01_RS21770 () | 4518745..4520058 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| IVL01_RS21775 () | 4520070..4520348 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| IVL01_RS21780 () | 4520345..4521466 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| IVL01_RS21785 () | 4521711..4521827 | - | 117 | Protein_4238 | VOC family protein | - |
| IVL01_RS21790 () | 4521865..4522083 | - | 219 | Protein_4239 | hypothetical protein | - |
| IVL01_RS21795 () | 4522252..4522998 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| IVL01_RS21800 () | 4523054..4523599 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| IVL01_RS21805 () | 4523611..4523868 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| IVL01_RS21810 () | 4524245..4524490 | - | 246 | Protein_4243 | GNAT family N-acetyltransferase | - |
| IVL01_RS21815 () | 4524606..4525846 | + | 1241 | Protein_4244 | DNA helicase | - |
| IVL01_RS21820 () | 4526429..4527409 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| IVL01_RS21825 () | 4527474..4528580 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| IVL01_RS21830 () | 4528600..4529316 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| IVL01_RS21835 () | 4530772..4531374 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| IVL01_RS21840 () | 4531852..4532448 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| IVL01_RS21845 () | 4532930..4533478 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| IVL01_RS21850 () | 4533543..4534082 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| IVL01_RS21855 () | 4534119..4534844 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| IVL01_RS21860 () | 4534911..4537547 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| IVL01_RS21865 () | 4537557..4538087 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| IVL01_RS21870 () | 4538100..4538603 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| IVL01_RS21875 () | 4538623..4539525 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |