MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP122318 Location: 2895058..2906848 Organism: Escherichia coli strain HT873X1 Replicon: chromosome
Accession: NZ_CP122318 Location: 2895058..2906848 Organism: Escherichia coli strain HT873X1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG45_RS14410 (2890749) | 2890749..2892062 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| QCG45_RS14415 (2892074) | 2892074..2892352 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| QCG45_RS14420 (2892349) | 2892349..2893470 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| QCG45_RS14425 (2893715) | 2893715..2893831 | - | 117 | Protein_2812 | VOC family protein | - |
| QCG45_RS14430 (2893869) | 2893869..2894087 | - | 219 | Protein_2813 | hypothetical protein | - |
| QCG45_RS14435 (2894256) | 2894256..2895002 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| QCG45_RS14440 (2895058) | 2895058..2895603 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| QCG45_RS14445 (2895615) | 2895615..2895872 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| QCG45_RS14450 (2896363) | 2896363..2896494 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| QCG45_RS14455 (2896610) | 2896610..2897850 | + | 1241 | Protein_2818 | helicase YjhR | - |
| QCG45_RS14460 (2898118) | 2898118..2898323 | - | 206 | Protein_2819 | HNH endonuclease | - |
| QCG45_RS14465 (2898433) | 2898433..2899413 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| QCG45_RS14470 (2899478) | 2899478..2900584 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| QCG45_RS14475 (2900604) | 2900604..2901320 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| QCG45_RS14480 (2902776) | 2902776..2903378 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| QCG45_RS14485 (2903856) | 2903856..2904452 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| QCG45_RS14490 (2904934) | 2904934..2905482 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| QCG45_RS14495 (2905547) | 2905547..2906086 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| QCG45_RS14500 (2906123) | 2906123..2906848 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| QCG45_RS14505 (2906915) | 2906915..2909551 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| QCG45_RS14510 (2909561) | 2909561..2910091 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| QCG45_RS14515 (2910104) | 2910104..2910607 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| QCG45_RS14520 (2910627) | 2910627..2911529 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |