MGE detailed information
MGE type: Genomic_island MGE length: 11029 bp
Accession: NZ_CP080163 Location: 4930904..4941932 Organism: Escherichia coli strain PK8275 Replicon: chromosome
Accession: NZ_CP080163 Location: 4930904..4941932 Organism: Escherichia coli strain PK8275 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZY08_RS23590 (4926383) | 4926383..4926886 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| KZY08_RS23595 (4926899) | 4926899..4927429 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| KZY08_RS23600 (4927439) | 4927439..4930075 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| KZY08_RS23605 (4930142) | 4930142..4930867 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| KZY08_RS23610 (4930904) | 4930904..4931443 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| KZY08_RS23615 (4931508) | 4931508..4932056 | - | 549 | WP_000695557.1 | hypothetical protein | VF |
| KZY08_RS23620 (4932538) | 4932538..4933134 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| KZY08_RS23625 (4933612) | 4933612..4934214 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| KZY08_RS23630 (4935670) | 4935670..4936386 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| KZY08_RS23635 (4936406) | 4936406..4937512 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| KZY08_RS23640 (4937577) | 4937577..4938557 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| KZY08_RS28285 (4938667) | 4938667..4938872 | + | 206 | Protein_4642 | HNH endonuclease | - |
| KZY08_RS23645 (4939140) | 4939140..4940380 | - | 1241 | Protein_4643 | helicase YjhR | - |
| KZY08_RS28290 (4940496) | 4940496..4940627 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| KZY08_RS23655 (4941118) | 4941118..4941375 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| KZY08_RS23660 (4941387) | 4941387..4941932 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| KZY08_RS23665 (4941988) | 4941988..4942734 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| KZY08_RS23670 (4942903) | 4942903..4943121 | + | 219 | Protein_4648 | hypothetical protein | - |
| KZY08_RS23675 (4943159) | 4943159..4943275 | + | 117 | Protein_4649 | VOC family protein | - |
| KZY08_RS23680 (4943520) | 4943520..4944641 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| KZY08_RS23685 (4944638) | 4944638..4944916 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| KZY08_RS23690 (4944928) | 4944928..4946241 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |