MGE detailed information
MGE type: Genomic_island MGE length: 12990 bp
Accession: NZ_CP067303 Location: 505435..518424 Organism: Escherichia coli strain ABW_A32 Replicon: chromosome
Accession: NZ_CP067303 Location: 505435..518424 Organism: Escherichia coli strain ABW_A32 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB23_RS02370 (501126) | 501126..502439 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| JJB23_RS02375 (502451) | 502451..502729 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| JJB23_RS02380 (502726) | 502726..503847 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| JJB23_RS02385 (504092) | 504092..504208 | - | 117 | Protein_468 | VOC family protein | - |
| JJB23_RS02390 (504246) | 504246..504464 | - | 219 | Protein_469 | hypothetical protein | - |
| JJB23_RS02395 (504633) | 504633..505379 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| JJB23_RS02400 (505435) | 505435..505980 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| JJB23_RS02405 (505992) | 505992..506249 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| JJB23_RS23415 (506740) | 506740..506871 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| JJB23_RS02415 (506987) | 506987..508227 | + | 1241 | Protein_474 | helicase YjhR | - |
| JJB23_RS02420 (508414) | 508414..509394 | + | 981 | WP_000019400.1 | IS5 family transposase IS5D | Transposase |
| JJB23_RS23420 (509694) | 509694..509899 | - | 206 | Protein_476 | HNH endonuclease | - |
| JJB23_RS02425 (510009) | 510009..510989 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JJB23_RS02430 (511054) | 511054..512160 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| JJB23_RS02435 (512180) | 512180..512896 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| JJB23_RS02440 (514352) | 514352..514954 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| JJB23_RS02445 (515432) | 515432..516028 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| JJB23_RS02450 (516510) | 516510..517058 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| JJB23_RS02455 (517123) | 517123..517662 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| JJB23_RS02460 (517699) | 517699..518424 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| JJB23_RS02465 (518491) | 518491..521127 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| JJB23_RS02470 (521137) | 521137..521667 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| JJB23_RS02475 (521680) | 521680..522183 | + | 504 | WP_000870585.1 | type 1 fimbria minor subunit FimG | - |
| JJB23_RS02480 (522203) | 522203..523105 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |