MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_LN832404 Location: 4529713..4541503 Organism: Escherichia coli K-12 substr. AG100 Replicon: chromosome
Accession: NZ_LN832404 Location: 4529713..4541503 Organism: Escherichia coli K-12 substr. AG100 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EK12AG100_RS22390 () | 4525404..4526717 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| EK12AG100_RS22395 () | 4526729..4527007 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| EK12AG100_RS22400 () | 4527004..4528125 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| EK12AG100_RS26025 () | 4528370..4528486 | - | 117 | Protein_4239 | VOC family protein | - |
| EK12AG100_RS25395 () | 4528524..4528742 | - | 219 | Protein_4240 | hypothetical protein | - |
| EK12AG100_RS22405 () | 4528911..4529657 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| EK12AG100_RS22410 () | 4529713..4530258 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| EK12AG100_RS22415 () | 4530270..4530527 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| EK12AG100_RS25870 () | 4530904..4531149 | - | 246 | Protein_4244 | GNAT family N-acetyltransferase | - |
| EK12AG100_RS22430 () | 4531265..4532505 | + | 1241 | Protein_4245 | helicase YjhR | - |
| EK12AG100_RS22435 () | 4533088..4534068 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| EK12AG100_RS22440 () | 4534133..4535239 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| EK12AG100_RS22445 () | 4535259..4535975 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| EK12AG100_RS22460 () | 4537431..4538033 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| EK12AG100_RS22465 () | 4538511..4539107 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| EK12AG100_RS22475 () | 4539589..4540137 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| EK12AG100_RS22480 () | 4540202..4540741 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| EK12AG100_RS22485 () | 4540778..4541503 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| EK12AG100_RS22490 () | 4541570..4544206 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| EK12AG100_RS22495 () | 4544216..4544746 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| EK12AG100_RS22500 () | 4544759..4545262 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| EK12AG100_RS22505 () | 4545282..4546184 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |