MGE detailed information
MGE type: Genomic_island MGE length: 11790 bp
Accession: NZ_CP068279 Location: 1045931..1057720 Organism: Escherichia coli strain CY708 Replicon: chromosome
Accession: NZ_CP068279 Location: 1045931..1057720 Organism: Escherichia coli strain CY708 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW05_RS04950 (1041622) | 1041622..1042935 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| JJW05_RS04955 (1042947) | 1042947..1043225 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| JJW05_RS04960 (1043222) | 1043222..1044343 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| JJW05_RS04965 (1044588) | 1044588..1044704 | - | 117 | Protein_963 | VOC family protein | - |
| JJW05_RS04970 (1044742) | 1044742..1044960 | - | 219 | Protein_964 | hypothetical protein | - |
| JJW05_RS04975 (1045129) | 1045129..1045875 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| JJW05_RS04980 (1045931) | 1045931..1046476 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| JJW05_RS04985 (1046488) | 1046488..1046745 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| JJW05_RS22910 (1047236) | 1047236..1047367 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| JJW05_RS04995 (1047483) | 1047483..1048723 | + | 1241 | Protein_969 | helicase YjhR | - |
| JJW05_RS22915 (1048991) | 1048991..1049196 | - | 206 | Protein_970 | HNH endonuclease | - |
| JJW05_RS05000 (1049306) | 1049306..1050286 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JJW05_RS05005 (1050351) | 1050351..1051457 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| JJW05_RS05010 (1051477) | 1051477..1052193 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| JJW05_RS05015 (1053649) | 1053649..1054251 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| JJW05_RS05020 (1054729) | 1054729..1055325 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| JJW05_RS05025 (1055806) | 1055806..1056354 | + | 549 | WP_000695564.1 | hypothetical protein | VF |
| JJW05_RS05030 (1056419) | 1056419..1056958 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| JJW05_RS05035 (1056995) | 1056995..1057720 | + | 726 | WP_000066547.1 | hypothetical protein | VF |
| JJW05_RS05040 (1057787) | 1057787..1060423 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| JJW05_RS05045 (1060433) | 1060433..1060963 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| JJW05_RS05050 (1060976) | 1060976..1061479 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| JJW05_RS05055 (1061499) | 1061499..1062401 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |