MGE detailed information
MGE type: Genomic_island MGE length: 11028 bp
Accession: NZ_CP090196 Location: 4405082..4416109 Organism: Escherichia coli strain YL3 Replicon: chromosome
Accession: NZ_CP090196 Location: 4405082..4416109 Organism: Escherichia coli strain YL3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXN07_RS21100 (4400561) | 4400561..4401064 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| LXN07_RS21105 (4401077) | 4401077..4401607 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| LXN07_RS21110 (4401617) | 4401617..4404253 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| LXN07_RS21115 (4404320) | 4404320..4405045 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| LXN07_RS21120 (4405082) | 4405082..4405621 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| LXN07_RS21125 (4405686) | 4405686..4406234 | - | 549 | WP_000695557.1 | hypothetical protein | VF |
| LXN07_RS21130 (4406715) | 4406715..4407311 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| LXN07_RS21135 (4407789) | 4407789..4408391 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| LXN07_RS21140 (4409847) | 4409847..4410563 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LXN07_RS21145 (4410583) | 4410583..4411689 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| LXN07_RS21150 (4411754) | 4411754..4412734 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LXN07_RS21155 (4412844) | 4412844..4413049 | + | 206 | Protein_4141 | HNH endonuclease | - |
| LXN07_RS21160 (4413317) | 4413317..4414557 | - | 1241 | Protein_4142 | helicase YjhR | - |
| LXN07_RS21165 (4414673) | 4414673..4414804 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| LXN07_RS21170 (4415295) | 4415295..4415552 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LXN07_RS21175 (4415564) | 4415564..4416109 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| LXN07_RS21180 (4416165) | 4416165..4416911 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LXN07_RS21185 (4417080) | 4417080..4417298 | + | 219 | Protein_4147 | hypothetical protein | - |
| LXN07_RS21190 (4417336) | 4417336..4417452 | + | 117 | Protein_4148 | VOC family protein | - |
| LXN07_RS21195 (4417697) | 4417697..4418818 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| LXN07_RS21200 (4418815) | 4418815..4419093 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LXN07_RS21205 (4419105) | 4419105..4420418 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |