MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP026027 Location: 4516555..4528345 Organism: Escherichia coli strain LIM Replicon: chromosome
Accession: NZ_CP026027 Location: 4516555..4528345 Organism: Escherichia coli strain LIM Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C2H82_RS23315 () | 4512246..4513559 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
C2H82_RS23320 () | 4513571..4513849 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
C2H82_RS23325 () | 4513846..4514967 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
C2H82_RS24245 () | 4515212..4515328 | - | 117 | Protein_4249 | VOC family protein | - |
C2H82_RS23330 () | 4515366..4515584 | - | 219 | Protein_4250 | hypothetical protein | - |
C2H82_RS23335 () | 4515753..4516499 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
C2H82_RS23340 () | 4516555..4517100 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
C2H82_RS23345 () | 4517112..4517369 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
C2H82_RS23355 () | 4517746..4517991 | - | 246 | Protein_4254 | GNAT family N-acetyltransferase | - |
C2H82_RS23365 () | 4518107..4519347 | + | 1241 | Protein_4255 | helicase YjhR | - |
C2H82_RS23370 () | 4519930..4520910 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
C2H82_RS23375 () | 4520975..4522081 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
C2H82_RS23380 () | 4522101..4522817 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
C2H82_RS23395 () | 4524273..4524875 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
C2H82_RS23400 () | 4525353..4525949 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
C2H82_RS23410 () | 4526431..4526979 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
C2H82_RS23415 () | 4527044..4527583 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
C2H82_RS23420 () | 4527620..4528345 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
C2H82_RS23425 () | 4528412..4531048 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
C2H82_RS23430 () | 4531058..4531588 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
C2H82_RS23435 () | 4531601..4532104 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
C2H82_RS23440 () | 4532124..4533026 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
---|---|---|---|---|---|---|
Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |