T6SS comparison

T6SS comparison tool is supplied to compare difference T6SS gene clusters in bacteria genome. Subject T6SS can be T6SS archived in SecReT6 or user input T6SS. If subject T6SS is set to auto selection, MultiGeneBlast is first performed to identify T6SSs similar to the query and the best hit will be selected. T6SS gene clusters will be aligned by BLASTn and visualized by Easyfig.


      1. Query T6SS

DNA sequence of T6SS region             Example: NC_002506.fasta
Gene annotation file             Example: annotation_query.tsv

      2. Subject T6SS


         

DNA sequence of T6SS region             Example: NZ_CP024868.fasta
Gene annotation file             Example: annotation_subject.tsv