Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01103 experimental
T6SS type Type i5
Strain Agrobacterium tumefaciens 1D1609
Replicon (RefSeq) chromosome (NZ_CP026925)
Location 1612910..1635897
Function anti-bacterial
Comment Agrobacterium tumefaciens 1D1609 has a funtional T6SS and employs a nuclease effector as the major T6SS-dependent antibacterial toxin. The secretion assay showed hcp and vgrG remain active in secretion while null in ΔtssL mutant
References
[1] Wu CF, Santos MNM, Cho ST, Chang HH, Tsai YM, Smith DA, Kuo CH, Chang JH, Lai EM. et al (2019) Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness.. Mol Plant Microbe Interact. 32(8):961-971. [PudMed:30830835]
[2] Santos MNM, Cho ST, Wu CF, Chang CJ, Kuo CH, Lai EM. et al (2020) Redundancy and Specificity of Type VI Secretion vgrG Loci in Antibacterial Activity of Agrobacterium tumefaciens 1D1609 Strain.. Front Microbiol. 2.502777778. [PudMed:31993035]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentTssATssBTssCTssDTssETssFTssGTssHTssITssKTssLTssM
Number112111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
IMU00350 experimental At1D1609_44750 (v3a) EFF01868 experimental Agrobacterium tumefaciens strain 1D1609 chromosome (NZ_CP026925) 1638588..1639688 (+) 1349686714

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector