Detailed information of effector
Summary
| Effector ID | EFF01867  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS01103 (Type i5) |
| Strain | Agrobacterium tumefaciens strain 1D1609 |
| Replicon | chromosome |
| Sequence | Protein sequence (202 a.a.); Nucleotide sequence (606 bp) |
| Description | Hcp and Tae were detected in the media fraction of each strain while Hcp was not detected in the media fractions of any of the ΔtssL mutants but could be detected in the media fractions of mutant strains complemented with their cognate tssL gene |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | At1D1609_RS22470 |
| Coordinates (Strand) | 1478708..1479313 (+) |
| NCBI ID | 1349686563 |
| RefSeq | NZ_CP026925 |
| Uniprot ID | A0A2L2LJ91_RHIRD |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DUF4150 | PF13665.8 | 4.9e-33 | 35..141 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-202 | MSIPRDNYIGEPQYPGTWTTATPREGLRDIDEARIVSLAPDVCLTPVGSSVVPIPYPVVDFCGHDKNYTPSVRFTGKKAMVMRSFTTHVHGDAPGNRKGVKSGTVESICEPIGHADQVRAEGSHVIRHLDRFYMNSRNTQGEAIFVRSTQTYDPPKDDDPVRGSLRWQDGSDEGRVMSDASPEPLIMGAQYAQAQTATIPQS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9773 | - | - |
Protein sequence: 202 a.a. .
>EFF01867 NZ_CP026925:1478708-1479313 (Unknown) [Agrobacterium tumefaciens]
MSIPRDNYIGEPQYPGTWTTATPREGLRDIDEARIVSLAPDVCLTPVGSSVVPIPYPVVDFCGHDKNYTPSVRFTGKKAM
VMRSFTTHVHGDAPGNRKGVKSGTVESICEPIGHADQVRAEGSHVIRHLDRFYMNSRNTQGEAIFVRSTQTYDPPKDDDP
VRGSLRWQDGSDEGRVMSDASPEPLIMGAQYAQAQTATIPQS
MSIPRDNYIGEPQYPGTWTTATPREGLRDIDEARIVSLAPDVCLTPVGSSVVPIPYPVVDFCGHDKNYTPSVRFTGKKAM
VMRSFTTHVHGDAPGNRKGVKSGTVESICEPIGHADQVRAEGSHVIRHLDRFYMNSRNTQGEAIFVRSTQTYDPPKDDDP
VRGSLRWQDGSDEGRVMSDASPEPLIMGAQYAQAQTATIPQS
Nucleotide sequence: 606 bp .
>EFF01867 NZ_CP026925:1478708-1479313 (Unknown) [Agrobacterium tumefaciens]
ATGAGCATCCCCCGCGACAATTATATCGGAGAGCCCCAATATCCCGGCACATGGACCACGGCGACACCGCGTGAGGGACT
GCGTGACATCGATGAGGCGCGTATCGTCTCTTTGGCGCCTGATGTATGCCTGACACCGGTTGGCTCGTCGGTGGTGCCTA
TTCCCTATCCGGTCGTGGATTTTTGCGGCCATGATAAAAACTACACGCCGTCTGTTCGGTTCACCGGCAAAAAGGCAATG
GTGATGCGTTCGTTTACGACACATGTGCACGGCGACGCGCCCGGTAACCGTAAGGGGGTAAAATCCGGCACGGTGGAAAG
CATCTGCGAACCCATCGGGCACGCTGATCAGGTGCGTGCCGAAGGCTCGCATGTCATTCGCCACCTCGATCGTTTTTATA
TGAACAGCAGGAATACCCAGGGTGAGGCGATCTTCGTCCGCAGCACGCAGACCTATGATCCTCCCAAGGACGATGATCCG
GTGCGGGGATCGCTCCGATGGCAGGACGGGTCGGACGAAGGCCGGGTTATGAGCGATGCGTCGCCCGAGCCGTTGATCAT
GGGTGCGCAGTATGCGCAGGCTCAGACCGCTACCATTCCTCAAAGC
ATGAGCATCCCCCGCGACAATTATATCGGAGAGCCCCAATATCCCGGCACATGGACCACGGCGACACCGCGTGAGGGACT
GCGTGACATCGATGAGGCGCGTATCGTCTCTTTGGCGCCTGATGTATGCCTGACACCGGTTGGCTCGTCGGTGGTGCCTA
TTCCCTATCCGGTCGTGGATTTTTGCGGCCATGATAAAAACTACACGCCGTCTGTTCGGTTCACCGGCAAAAAGGCAATG
GTGATGCGTTCGTTTACGACACATGTGCACGGCGACGCGCCCGGTAACCGTAAGGGGGTAAAATCCGGCACGGTGGAAAG
CATCTGCGAACCCATCGGGCACGCTGATCAGGTGCGTGCCGAAGGCTCGCATGTCATTCGCCACCTCGATCGTTTTTATA
TGAACAGCAGGAATACCCAGGGTGAGGCGATCTTCGTCCGCAGCACGCAGACCTATGATCCTCCCAAGGACGATGATCCG
GTGCGGGGATCGCTCCGATGGCAGGACGGGTCGGACGAAGGCCGGGTTATGAGCGATGCGTCGCCCGAGCCGTTGATCAT
GGGTGCGCAGTATGCGCAGGCTCAGACCGCTACCATTCCTCAAAGC