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The Microbial Bioinformatics Group at the State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University, is focused on genome mining for bacterial mobile genome (mobilome), including: (i) characterization of the genomic islands in Klebsiella pneumoniae and the other opportunistic Gram-negative pathogens of the so-called "ESKAPE" group; (ii) development of the bioinformatics tools/databases for genomic island analysis.   
  News
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Apr-2018, Mol. Microbiol. 配发乙酰基转移酶类毒素-抗毒素系统论文专评
Mar-2018 [交大智慧]交大团队在耐药病原菌毒素-抗毒素系统研究中获进展
Feb-2017 [交大智慧]交大团队开发微生物信息学新软件推进病原细菌可移动基因组研究
Dec-2016, Seminar, Phage lysis: do we have the “hole” story now
Oct-27-2016, Seminar, Histidine kinase: receptor of β-lactam antibiotics in Gram negative bacteria
Oct-8-2016, Seminar, Systematic Bioinformatic Collection of Vaccines and Pathogen Virulence Factors
Oct. 2015, SJTU-software BASE received a gold medal in iGEM
 
Publications
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Publication list: Book chapters and peer-reviewed papers (2007 - present)
NAR 2018: oriT and relaxase database oriTfinder
Mol Microbiol 2018: GNAT-RHH family TA system in K. pneumoniae
Virulence 2018: transferable resistance plasmid of hvKP
Virulence 2018: K. pneumoniae ST374 K2 genome
NAR 2018: Updated toxin-antitoxin database TADB2
FCIM 2017: antibacterial T6SS in K. pneumoniae

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