Microbial Bioinformatics Group, SKMML, SJTU 
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The Microbial Bioinformatics Group at the State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University, is focused on genome mining for bacterial mobile genome (mobilome), including: (i) characterization of the genomic islands in Klebsiella pneumoniae and the other opportunistic Gram-negative pathogens of the so-called "ESKAPE" group; (ii) development of the bioinformatics tools/databases for genomic island analysis.   
  News
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Sept-25-2019, Seminar, Novel resistance plasmids based on nanopore sequencing
Aug-2019 [交大智慧]上海交大联合发现与细菌药物耐受相关的乙酰基转移酶类毒素-抗毒素系统的转录调控机制
微生物信息学研究组2019年博士和硕士研究生招生情况说明
Apr-30-2019, Seminar, Bacterial 3’UTR fragments are a novel class of regulatory RNA
Jul-2018 [交大智慧]上海交大团队在病原细菌耐药质粒接合转移研究中获进展
May-2018, 乙酰基转移酶类毒素-抗毒素系统论文入选Mol. Microbiol. 封面论文, 配发专评
Mar-2018 [交大智慧]交大团队在耐药病原菌毒素-抗毒素系统研究中获进展
 
Publications
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Publication list: Book chapters and peer-reviewed papers (2007 - present)
NAR 2019: GNAT-RHH TA locus kacAT is regulated by conditional cooperativity
NAR 2019: updated integrative and conjugative element database ICEberg2
NAR 2018: oriT region prediction tool, oriTfinder
Mol Microbiol 2018: GNAT-RHH family TA system in K. pneumoniae
Virulence 2018: transferable resistance plasmid of hvKP
Virulence 2018: K. pneumoniae ST374 K2 genome

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