Detailed information of effector


Summary

Effector ID EFF01844 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS01103 experimental (Type i5)
Strain Agrobacterium tumefaciens strain 1D1609
Replicon chromosome
Sequence Protein sequence (755 a.a.); Nucleotide sequence (2265 bp)
Description VgrG
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) At1D1609_RS22460
Coordinates (Strand) 1475318..1477582 (+)
NCBI ID 1352522504
RefSeq NZ_CP026925
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.4e-74 36..346
Phage_base_V PF04717.14 2.9e-12 400..467

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-754 MNDQPSSSDFIQASRVLKVKSPLGENQLLPERLSVEEGVSQLFDIRLTVRAQKEAVKPEELIGRLVDISIEISQGEGDGGGVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEVVETLFSEHGIPAPDTSGIISPPPAQHYSVQWNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTSRILEAGRRFTPYEVAHPEHAYEEHVIIRASHNIVDLSYETNGNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSVNTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAGTALAGSGSGVGSDASGLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKFIMKANGEVIILGKTFNFVATDHFQLRGKPIDLN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -



  Protein sequence: 755 a.a.    .

>EFF01844 NZ_CP026925:1475318-1477582 [Agrobacterium tumefaciens]
MNDQPSSSDFIQASRVLKVKSPLGENQLLPERLSVEEGVSQLFDIRLTVRAQKEAVKPEELIGRLVDISIEISQGEGDGG
GVRRPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEVVETLFSEHGIPAPDTSGIISPPPAQH
YSVQWNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLGPSPAAQGEGTVRLAQGSSDRNHINDWARRFSYVS
GQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEADHDRVFGSSTSRILEAGRR
FTPYEVAHPEHAYEEHVIIRASHNIVDLSYETNGNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIH
PDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSVPYDLP
ANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQTTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSV
NTVVGGTGPMAMMAMAGVQALSGQTAGLLSQAAQIAGGGGPGVAAFATTLASSALGFLGAGGLSSREGVVSGPSPRADAG
TALAGSGSGVGSDASGLFPLPGIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSK
FIMKANGEVIILGKTFNFVATDHFQLRGKPIDLN*

  Nucleotide sequence: 2265 bp    .

>EFF01844 NZ_CP026925:1475318-1477582 [Agrobacterium tumefaciens]
ATGAATGACCAGCCCTCATCCTCTGACTTCATTCAGGCGAGTCGTGTGCTCAAGGTCAAGTCGCCTTTGGGCGAGAATCA
GCTTCTGCCAGAGCGCCTGTCCGTCGAGGAGGGCGTATCGCAGCTCTTCGACATTCGCCTGACGGTGCGTGCCCAGAAGG
AAGCGGTCAAGCCCGAAGAGCTGATCGGACGGCTGGTCGATATCTCCATCGAGATCAGCCAGGGCGAGGGCGATGGCGGC
GGTGTTCGCCGCCCCTTTAACGGCCTGGTGACGGAGCTGCATGAAGGCCCGCCGATCACCCGCGGCATGCGCTCCTATGC
GCTGACCATCCGCCCGCAAATGTGGCTTCTGTCGCGCCGGTCGGATTGCCGTATCTGGATGGACAAGACGGCGGTGGAGG
TCGTCGAGACGCTGTTTTCCGAACACGGCATTCCCGCTCCCGATACATCGGGCATCATCTCGCCGCCGCCCGCACAGCAT
TACAGCGTGCAATGGAACGAGACGGATCTCGATTATCTCACCCGCCGTTTTGAAGAGGACGGCCTGTTCTACTGGTTCAG
CCATGAGGATGGTTCTCACAAGCTGCATGTGGCCGATAGCGCCAGCGGCTGGCTTGGGCCGTCGCCGGCAGCCCAGGGGG
AGGGGACGGTGCGTCTGGCGCAGGGGTCTTCGGATCGTAACCACATCAACGACTGGGCGCGGCGTTTTTCCTATGTTTCG
GGCCAGCGCGCTGGCGCGGACTGGAATTTCGAGACGCCGGGCATGGTGCCGGGCACGATGACACCGTCGCTGGTGCAGAT
GCCGGATGCGACGAAGCGCGAGCTTTACGAATATCCGGCCCGCATCAAGACGGTGGAAGAGGCCGAGCGCGCGCAGAAAC
TGCGCACCCAGTCCATCGAAGCCGATCACGACCGGGTTTTCGGTTCGTCGACCTCGCGCATTCTGGAGGCCGGCCGCCGT
TTCACGCCTTACGAGGTCGCCCATCCCGAACACGCCTATGAAGAACATGTGATCATCAGGGCAAGCCACAATATTGTCGA
TCTCTCTTATGAGACCAATGGCAACGAGCCGGAATATCGCAATCACTTCGAGGCGATCCCCGCCCGTGTGCCGCTGACGC
CGCACCGGTCAACAAAACGCCCGCGCATCGAAGGGACGCAGGTGGCGATCGTCGCCGGACCTGAAGGCGAGGAAATCCAT
CCTGACCAATATGGCCGCATCAAGCTGTGGTTCCCGTGGGACCGCAAGGCGAAGAAGGATGGCACGGATACGTGCTGGGT
TCGTGTGAGCCAGGCATGGGGCGGTGGCACATGGGGTGCGCAGGTCATTCCGCGCATCGGCATGGAGGTGATGGTCGCCT
TTGTCGATGGAGACCCGGATAAGCCGCTGGTCATCGGCGTGGTCAACAATCCGGCCAATTCCGTGCCTTACGACCTGCCG
GCCAACAAGACGCGCATGGTGCTGCGCTCCAACAGCCACAAGGGCGACGGTTTCAACGAAATCACCTTCGAGGATGAGGC
CGGCAAGGAGAACCAGTTTTTCCACGCCCAGAAGGACCAGACGACGCGGGTTCTGAATGACCGGACCAAGCGCATCGATC
GGCATGAGGTCGCCTCGGTCGGCGGCAACCGCGCGGTGGAAGTTTCCGGCAACCAGAAACACGAGATCGGCGGCTCGGTA
AACACCGTCGTCGGCGGAACGGGGCCGATGGCGATGATGGCCATGGCCGGCGTGCAGGCGCTCTCCGGGCAGACGGCGGG
GCTGCTTTCGCAGGCCGCCCAGATCGCCGGCGGCGGTGGCCCGGGTGTCGCGGCCTTCGCCACCACGCTCGCCTCATCCG
CACTCGGCTTCCTCGGCGCAGGCGGTCTTTCATCGCGTGAGGGGGTCGTTTCCGGCCCGAGCCCACGTGCGGATGCGGGC
ACGGCGCTCGCCGGCTCCGGCTCGGGCGTCGGTTCCGATGCTTCGGGATTGTTTCCGCTGCCGGGCATCATGAACACGAT
CGTCAGCACGTTCAAATCCGACAGCGTCGGGGTGGCGCGGGCAGAACAGATCGGGGTGAGCAAGGTTACGAATGTCGGCC
AGACGTCGCTGGAAAGCGTCGGAAAGTTCAAGAAGATTGCAGTCGGTGAAGAGTTCGTCATCGAATGCGGCGATTCCAAA
TTCATCATGAAGGCGAATGGCGAGGTCATCATTCTTGGCAAGACCTTCAACTTCGTGGCGACGGATCATTTTCAGCTTCG
CGGCAAGCCGATCGATCTGAACTGA