Detailed information of effector
Summary
| Effector ID | EFF01827  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS01103 (Type i5) |
| Strain | Agrobacterium tumefaciens strain 1D1609 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | At1D1609_44690 (hcp) |
| Coordinates (Strand) | 1632132..1632608 (+) |
| NCBI ID | 1349686708 |
| RefSeq | NZ_CP026925 |
| Uniprot ID | A0A083ZID2_RHIRD |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 8.8e-33 | 4..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGKLATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9890 | - | - |
Protein sequence: 159 a.a. .
>EFF01827 NZ_CP026925:1632132-1632608 (Unknown) [Agrobacterium tumefaciens]
MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGK
LATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA*
MPIYLQIDGIQGDATHEEHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTISEVILTKVSDSSSTKLFQEACAGRTGK
LATIHLVTTGNPGNTYIEYLLTNTLIASYSVDSSGDRPVETIKLNFTKMEVKYTPFDDNNSPQSPMIASYDLATTKAA*
Nucleotide sequence: 477 bp .
>EFF01827 NZ_CP026925:1632132-1632608 (Unknown) [Agrobacterium tumefaciens]
ATGCCAATTTATCTGCAGATTGACGGTATCCAGGGCGACGCCACGCATGAGGAACACCGCAAGTGGATGGACATCGAAGC
CATTCACTGGAACGTAGCGCGCAACATGAACACTTCTGCCGGTTCTGCTGCAAACCGCGAAGCATCCGAACCGACCATTT
CGGAAGTCATTCTGACCAAGGTTAGCGATTCTTCTTCCACCAAGCTTTTCCAGGAAGCCTGCGCTGGCCGCACTGGCAAG
CTCGCAACCATCCATCTGGTGACAACGGGTAATCCGGGCAACACCTATATCGAGTATCTGCTGACGAATACGCTCATCGC
CAGCTACTCGGTGGATTCCAGCGGTGACCGTCCGGTGGAAACCATCAAGCTCAACTTCACCAAGATGGAAGTGAAGTACA
CGCCGTTCGACGACAACAACTCGCCGCAGTCTCCGATGATCGCCTCTTACGATCTGGCGACGACGAAGGCCGCTTGA
ATGCCAATTTATCTGCAGATTGACGGTATCCAGGGCGACGCCACGCATGAGGAACACCGCAAGTGGATGGACATCGAAGC
CATTCACTGGAACGTAGCGCGCAACATGAACACTTCTGCCGGTTCTGCTGCAAACCGCGAAGCATCCGAACCGACCATTT
CGGAAGTCATTCTGACCAAGGTTAGCGATTCTTCTTCCACCAAGCTTTTCCAGGAAGCCTGCGCTGGCCGCACTGGCAAG
CTCGCAACCATCCATCTGGTGACAACGGGTAATCCGGGCAACACCTATATCGAGTATCTGCTGACGAATACGCTCATCGC
CAGCTACTCGGTGGATTCCAGCGGTGACCGTCCGGTGGAAACCATCAAGCTCAACTTCACCAAGATGGAAGTGAAGTACA
CGCCGTTCGACGACAACAACTCGCCGCAGTCTCCGATGATCGCCTCTTACGATCTGGCGACGACGAAGGCCGCTTGA