Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01265 experimental
T6SS type Type i4b
Strain Burkholderia glumae 336gr-1
Replicon (GenBank) chromosome (AYPW01000191)
Location 2..8161
Function anti-bacterial
Comment Inactivation of T6SS1 in B. thailandensis rendered reduced competition ability of B. thailandensis against several bacteria.
References
[1] Peng J, Lelis T, Chen R, Barphagha I, Osti S, Ham JH. et al (2020) tepR encoding a bacterial enhancer-binding protein orchestrates the virulence and interspecies competition of Burkholderia glumae through qsmR and a type VI secretion system.. Mol Plant Pathol. 21(8):1042-1054. [PudMed:32608174]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentTssBTssCTssDTssETssFTssGTssH
Number1111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
T6CP015758 TssB Locus_01 2..343 + 342 pseudogene -
T6CP015759 TssC Locus_02 358..1848 + 1491 pseudogene -
T6CP015760 TssD Locus_03 1926..2429 + 504 pseudogene -
T6CP015761 TssE Locus_04 2507..2989 + 483 pseudogene -
T6CP015762 TssF Locus_05 3082..4920 + 1839 pseudogene -
T6CP015763 TssG Locus_06 4884..5981 + 1098 pseudogene -
T6CP015764 TssH Locus_07 6047..8161 + 2115 pseudogene -
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector