Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01265  |
| T6SS type | Type i4b |
| Strain | Burkholderia glumae 336gr-1 |
| Replicon (GenBank) | chromosome (AYPW01000191) |
| Location | 2..8161 |
| Function | anti-bacterial |
| Comment | Inactivation of T6SS1 in B. thailandensis rendered reduced competition ability of B. thailandensis against several bacteria. |
| References | [1] Peng J, Lelis T, Chen R, Barphagha I, Osti S, Ham JH. et al (2020) tepR encoding a bacterial enhancer-binding protein orchestrates the virulence and interspecies competition of Burkholderia glumae through qsmR and a type VI secretion system.. Mol Plant Pathol. 21(8):1042-1054. [PudMed:32608174] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TssB | TssC | TssD | TssE | TssF | TssG | TssH |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP015758 | TssB | Locus_01 | 2..343 | + | 342 | pseudogene | - |
| T6CP015759 | TssC | Locus_02 | 358..1848 | + | 1491 | pseudogene | - |
| T6CP015760 | TssD | Locus_03 | 1926..2429 | + | 504 | pseudogene | - |
| T6CP015761 | TssE | Locus_04 | 2507..2989 | + | 483 | pseudogene | - |
| T6CP015762 | TssF | Locus_05 | 3082..4920 | + | 1839 | pseudogene | - |
| T6CP015763 | TssG | Locus_06 | 4884..5981 | + | 1098 | pseudogene | - |
| T6CP015764 | TssH | Locus_07 | 6047..8161 | + | 2115 | pseudogene | - |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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