Detailed information of component protein


Summary

Component ID T6CP015758
Component protein type TssB
T6SS ID (Type) T6SS01265 experimental (Type i4b)
Strain Burkholderia glumae 336gr-1
Replicon chromosome
Sequence Protein sequence (114 a.a.); Nucleotide sequence (342 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 2..343 (+)
NCBI ID -
GenBank AYPW01000191
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2e-35 1..97
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-113 RDNFDDVMKAIEPRAAYQVENKLSEDGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKMAGNDKLEDLLSEVLSNTQQLEALAKQSGEADGKPDDGKNSGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 114 a.a.    

>T6CP015758 AYPW01000191:2-343 [Burkholderia glumae 336gr-1] [TssB]
RDNFDDVMKAIEPRAAYQVENKLSEDGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKMAGNDKLEDL
LSEVLSNTQQLEALAKQSGEADGKPDDGKNSGE*

  Nucleotide sequence: 342 bp    

>T6CP015758 AYPW01000191:2-343 [Burkholderia glumae 336gr-1] [TssB]
CGCGACAACTTCGACGACGTGATGAAGGCGATCGAGCCGCGCGCGGCCTACCAGGTCGAGAACAAGCTCAGCGAGGACGG
CGGCAAGTTCGCGGTGGACCTGAAGTTCCGCTCGCTCGACGATTTCGATCCGGACCAGGTGGTCAACCAGATCGAGCCGC
TGCGCCGCCTGATCGAGGCGCGCTCGAAGCTGGCCGACCTGCGCAACAAGATGGCCGGCAACGACAAGCTCGAGGATCTC
CTGAGCGAGGTGCTCAGCAACACGCAGCAGCTCGAGGCGCTCGCCAAGCAATCGGGCGAGGCGGACGGCAAGCCGGACGA
CGGCAAGAACAGCGGCGAATGA