Detailed information of component protein


Summary

Component ID T6CP015763
Component protein type TssG
T6SS ID (Type) T6SS01265 experimental (Type i4b)
Strain Burkholderia glumae 336gr-1
Replicon chromosome
Sequence Protein sequence (366 a.a.); Nucleotide sequence (1098 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 4884..5981 (+)
NCBI ID -
GenBank AYPW01000191
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 8.8e-93 19..345
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-365 MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDAAGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFVGKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVRLVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9893 - -


  Protein sequence: 366 a.a.    

>T6CP015763 AYPW01000191:4884-5981 [Burkholderia glumae 336gr-1] [TssG]
MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA
AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY
RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR
LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH*

  Nucleotide sequence: 1098 bp    

>T6CP015763 AYPW01000191:4884-5981 [Burkholderia glumae 336gr-1] [TssG]
ATGCCAACCGCGAAGCGGCGAATCGATCCTGGCGTAGTCGGGCAATTCCTCGACGAGCCGTATCGCTTCGAGTTCTTCCA
GGCGGTGCGCTTGCTCGAAACCTGGTTCGCGCGGCGTGATCCGGAGAAGCCCGACGCGCTGCGGCCCGGCGAGATCGTCG
AGCGGCGCCTGGCGTTCCGCAATTCGCTGTCGCTCGGCTTCCCGCCGAGCGAGATCGAGGAGGCGCAGTCGTTCGACGCG
GCCGGCGAGCACGTGGCCGAGGAGGCGCGCGCGGCCGCGATCGGCAGCGAGGCGATCGACCGCGTGTCGATCATGCCGGC
GTTCTTCGGCCTGCTGGGCGGCCAGGGCGCGCTGCCGCATCACTACACCGAGCAGGTGGTGGCGCGCGAGCACCTGAAGC
GCGACCACGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCCACCGCGCTGTTCTATTCGGCGTGGAAGAAGTAC
CGGCTGCCGCTGCATTACGAACTCGACCGCGACGAGCGCTACCTGCCGCTGCTGCTCGCGCTGGCCGGCGTGTCGCACCG
CGGCGCGCGGCGAGCGATGCAGGAAGGCACCGGCGCGGTGATCGACGAGGCGATCGCCGGCTACGCGCTGGCCGCGCGGC
ACCGGCCCGTGTCGGCCGCCTATCTGCAGCGCACGCTGTCGGACTACTTCCAGGTGACGATCGGCGTCGAGCAGTTCGTC
GGCAAGTGGTACGACGTGCCGCCCGACCAGCTGAGCGTGCTCGGCGAGATCAACGCCACGCTCGGCGCCACCGCGCTGGT
GGGCGAGCGCGTCTGGCAGCGCGACATGCGCGCGAGGCTGGTGGTTGGCCCGCTCTCCAAGCGCGACTACGAGGCGTTCC
TGCCCGGCGGCGACTGCGCGGTCGCGCTGGAGCGGATGCTGACGCTGGTGGCCGGCGTCACGCTCGAATACGAGGTCCGG
CTGGTGCTCAAGCGCGCCGAGGTCGGCCCGACCATCCTCAACAACGGCGGGCGGCTCGGCTGGGACGCGTTCCTCTGCAC
GCAGGAGGCGCGGCACGACCGCGCCGACGCGCGCTACGAACTGCACGTGATCCACTGA