Detailed information of component protein
Summary
Component ID | T6CP015763 |
Component protein type | TssG |
T6SS ID (Type) | T6SS01265 (Type i4b) |
Strain | Burkholderia glumae 336gr-1 |
Replicon | chromosome |
Sequence | Protein sequence (366 a.a.); Nucleotide sequence (1098 bp) |
Reference |
External database links
Locus tag (Gene) | - |
Coordinate (Strand) | 4884..5981 (+) |
NCBI ID | - |
GenBank | AYPW01000191 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 8.8e-93 | 19..345 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-365 | MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDAAGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFVGKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVRLVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9893 | - | - |
Protein sequence: 366 a.a.
>T6CP015763 AYPW01000191:4884-5981 [Burkholderia glumae 336gr-1] [TssG]
MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA
AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY
RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR
LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH*
MPTAKRRIDPGVVGQFLDEPYRFEFFQAVRLLETWFARRDPEKPDALRPGEIVERRLAFRNSLSLGFPPSEIEEAQSFDA
AGEHVAEEARAAAIGSEAIDRVSIMPAFFGLLGGQGALPHHYTEQVVAREHLKRDHAARAFFDVFSNRATALFYSAWKKY
RLPLHYELDRDERYLPLLLALAGVSHRGARRAMQEGTGAVIDEAIAGYALAARHRPVSAAYLQRTLSDYFQVTIGVEQFV
GKWYDVPPDQLSVLGEINATLGATALVGERVWQRDMRARLVVGPLSKRDYEAFLPGGDCAVALERMLTLVAGVTLEYEVR
LVLKRAEVGPTILNNGGRLGWDAFLCTQEARHDRADARYELHVIH*
Nucleotide sequence: 1098 bp
>T6CP015763 AYPW01000191:4884-5981 [Burkholderia glumae 336gr-1] [TssG]
ATGCCAACCGCGAAGCGGCGAATCGATCCTGGCGTAGTCGGGCAATTCCTCGACGAGCCGTATCGCTTCGAGTTCTTCCA
GGCGGTGCGCTTGCTCGAAACCTGGTTCGCGCGGCGTGATCCGGAGAAGCCCGACGCGCTGCGGCCCGGCGAGATCGTCG
AGCGGCGCCTGGCGTTCCGCAATTCGCTGTCGCTCGGCTTCCCGCCGAGCGAGATCGAGGAGGCGCAGTCGTTCGACGCG
GCCGGCGAGCACGTGGCCGAGGAGGCGCGCGCGGCCGCGATCGGCAGCGAGGCGATCGACCGCGTGTCGATCATGCCGGC
GTTCTTCGGCCTGCTGGGCGGCCAGGGCGCGCTGCCGCATCACTACACCGAGCAGGTGGTGGCGCGCGAGCACCTGAAGC
GCGACCACGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCCACCGCGCTGTTCTATTCGGCGTGGAAGAAGTAC
CGGCTGCCGCTGCATTACGAACTCGACCGCGACGAGCGCTACCTGCCGCTGCTGCTCGCGCTGGCCGGCGTGTCGCACCG
CGGCGCGCGGCGAGCGATGCAGGAAGGCACCGGCGCGGTGATCGACGAGGCGATCGCCGGCTACGCGCTGGCCGCGCGGC
ACCGGCCCGTGTCGGCCGCCTATCTGCAGCGCACGCTGTCGGACTACTTCCAGGTGACGATCGGCGTCGAGCAGTTCGTC
GGCAAGTGGTACGACGTGCCGCCCGACCAGCTGAGCGTGCTCGGCGAGATCAACGCCACGCTCGGCGCCACCGCGCTGGT
GGGCGAGCGCGTCTGGCAGCGCGACATGCGCGCGAGGCTGGTGGTTGGCCCGCTCTCCAAGCGCGACTACGAGGCGTTCC
TGCCCGGCGGCGACTGCGCGGTCGCGCTGGAGCGGATGCTGACGCTGGTGGCCGGCGTCACGCTCGAATACGAGGTCCGG
CTGGTGCTCAAGCGCGCCGAGGTCGGCCCGACCATCCTCAACAACGGCGGGCGGCTCGGCTGGGACGCGTTCCTCTGCAC
GCAGGAGGCGCGGCACGACCGCGCCGACGCGCGCTACGAACTGCACGTGATCCACTGA
ATGCCAACCGCGAAGCGGCGAATCGATCCTGGCGTAGTCGGGCAATTCCTCGACGAGCCGTATCGCTTCGAGTTCTTCCA
GGCGGTGCGCTTGCTCGAAACCTGGTTCGCGCGGCGTGATCCGGAGAAGCCCGACGCGCTGCGGCCCGGCGAGATCGTCG
AGCGGCGCCTGGCGTTCCGCAATTCGCTGTCGCTCGGCTTCCCGCCGAGCGAGATCGAGGAGGCGCAGTCGTTCGACGCG
GCCGGCGAGCACGTGGCCGAGGAGGCGCGCGCGGCCGCGATCGGCAGCGAGGCGATCGACCGCGTGTCGATCATGCCGGC
GTTCTTCGGCCTGCTGGGCGGCCAGGGCGCGCTGCCGCATCACTACACCGAGCAGGTGGTGGCGCGCGAGCACCTGAAGC
GCGACCACGCGGCGCGCGCGTTCTTCGACGTGTTCTCGAACCGCGCCACCGCGCTGTTCTATTCGGCGTGGAAGAAGTAC
CGGCTGCCGCTGCATTACGAACTCGACCGCGACGAGCGCTACCTGCCGCTGCTGCTCGCGCTGGCCGGCGTGTCGCACCG
CGGCGCGCGGCGAGCGATGCAGGAAGGCACCGGCGCGGTGATCGACGAGGCGATCGCCGGCTACGCGCTGGCCGCGCGGC
ACCGGCCCGTGTCGGCCGCCTATCTGCAGCGCACGCTGTCGGACTACTTCCAGGTGACGATCGGCGTCGAGCAGTTCGTC
GGCAAGTGGTACGACGTGCCGCCCGACCAGCTGAGCGTGCTCGGCGAGATCAACGCCACGCTCGGCGCCACCGCGCTGGT
GGGCGAGCGCGTCTGGCAGCGCGACATGCGCGCGAGGCTGGTGGTTGGCCCGCTCTCCAAGCGCGACTACGAGGCGTTCC
TGCCCGGCGGCGACTGCGCGGTCGCGCTGGAGCGGATGCTGACGCTGGTGGCCGGCGTCACGCTCGAATACGAGGTCCGG
CTGGTGCTCAAGCGCGCCGAGGTCGGCCCGACCATCCTCAACAACGGCGGGCGGCTCGGCTGGGACGCGTTCCTCTGCAC
GCAGGAGGCGCGGCACGACCGCGCCGACGCGCGCTACGAACTGCACGTGATCCACTGA