Detailed information of component protein
Summary
Component ID | T6CP015759 |
Component protein type | TssC |
T6SS ID (Type) | T6SS01265 (Type i4b) |
Strain | Burkholderia glumae 336gr-1 |
Replicon | chromosome |
Sequence | Protein sequence (497 a.a.); Nucleotide sequence (1491 bp) |
Reference |
External database links
Locus tag (Gene) | - |
Coordinate (Strand) | 358..1848 (+) |
NCBI ID | - |
GenBank | AYPW01000191 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 9.3e-136 | 68..370 |
VipB_2 | PF18945.2 | 1.5e-46 | 380..490 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-496 | MNQQTAAAQQSGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISAQMSAVMHAPEFQRLESTWRGLDYLVSESNTGSTIKIKAMHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGALIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGLTLPRFLGRLPFHPKDGQIAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVAEIPGKPGSYRSVAFLRPHFQLDELSISLRLVADLPKSANS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9862 | - | - |
Protein sequence: 497 a.a.
>T6CP015759 AYPW01000191:358-1848 [Burkholderia glumae 336gr-1] [TssC]
MNQQTAAAQQSGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISA
QMSAVMHAPEFQRLESTWRGLDYLVSESNTGSTIKIKAMHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFHPKDGQIAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIA
HYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVAEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKSANS*
MNQQTAAAQQSGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISA
QMSAVMHAPEFQRLESTWRGLDYLVSESNTGSTIKIKAMHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFHPKDGQIAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIA
HYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVAEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKSANS*
Nucleotide sequence: 1491 bp
>T6CP015759 AYPW01000191:358-1848 [Burkholderia glumae 336gr-1] [TssC]
ATGAACCAGCAAACGGCTGCGGCCCAGCAGTCCGGTGCCCTCGAAGGCGCCGAAACATCGCTTCTCGACGAGATCGTCGA
GAAGAGCAAGGTCGCCAAATCGCAGTCCGAGCACGCACGTGCGAAGGACCTGATCGGCGAACTCGTGCATCAGGTGCTCG
ACGGCACCGTGATCGTCTCGGACAATCTGTCGGCCACCATCGACGCGCGCGTGGCCGAGCTCGACCGGCTGATCTCGGCG
CAGATGAGCGCGGTGATGCACGCGCCCGAATTCCAGCGCCTCGAAAGCACCTGGCGCGGCCTCGACTATCTGGTCTCGGA
GAGCAACACCGGCTCGACCATCAAGATCAAGGCGATGCACGCGCCCAAGCGCGAGCTGGTGCGCGACTTCAAGGCCGCCA
CCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAGGAAGAGTTCGGCACCTTCGGCGGCGCGCCGTTCGGCGCG
CTGATCGGCGACTACGAGATCTCGCGCCAGCCCGAGGACATGTACTTCATCGAGCAGATGTCGCACGTGGCGGCCGCCGC
GCACGCGCCGTTCATCGCCTCGGCCGCGCCCGAGCTGATCGGCCTCGAGTCGTTCGCCGACCTCGGCAAGCCGCGCGATC
TCGGCAAGGTGTTCGACACCGTCGAATACGCGAAGTGGAAATCGTTCCGCGACTCGGAGGATTCGCGCTACGTCGGCCTC
ACGCTGCCGCGTTTCCTCGGCCGCCTGCCGTTCCATCCCAAGGACGGCCAGATCGCCGAGAGCTTCAATTTCGTCGAGGA
CGTCGACGGCACCGATCATTCGAAATATCTGTGGTGCAACGCCGCCTGGGCGTTCGCGGCGCGCCTGACCGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTGGAGGGCGGCGGCCTGGTCGAGGATCTGCCCACCCATACCTTCAAG
ACCGACGACGGCGAGATCGCGCTGAAGTGCCCCACCGAGATCGCGATCACCGACCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTCCATTGCAAGAACTCCGACTACGCTGCCTTCTTCGCCGCCCAGTCGGTGCAGAAGCCCAAGA
AATACAACACCGACAGCGCGAACGCGAACGCGGTGCTGTCCGCTCAGCTCCAGTACATCTTCTCGGTATCGCGCATCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCCTCCGCGCAGAACGTGGAATCTTTCCTGAATCGCTG
GATCTCCCAGTACGTGCTGCTGGACGACAACGCGACGCAGGAACAGAAAGCGCAGTTTCCGCTGCGCGAAGCTTCGGTCC
AGGTGGCCGAGATTCCGGGCAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGGCCGCACTTCCAGCTCGACGAACTC
TCGATCTCGCTGCGCCTGGTCGCGGATCTGCCCAAGTCGGCAAATTCATGA
ATGAACCAGCAAACGGCTGCGGCCCAGCAGTCCGGTGCCCTCGAAGGCGCCGAAACATCGCTTCTCGACGAGATCGTCGA
GAAGAGCAAGGTCGCCAAATCGCAGTCCGAGCACGCACGTGCGAAGGACCTGATCGGCGAACTCGTGCATCAGGTGCTCG
ACGGCACCGTGATCGTCTCGGACAATCTGTCGGCCACCATCGACGCGCGCGTGGCCGAGCTCGACCGGCTGATCTCGGCG
CAGATGAGCGCGGTGATGCACGCGCCCGAATTCCAGCGCCTCGAAAGCACCTGGCGCGGCCTCGACTATCTGGTCTCGGA
GAGCAACACCGGCTCGACCATCAAGATCAAGGCGATGCACGCGCCCAAGCGCGAGCTGGTGCGCGACTTCAAGGCCGCCA
CCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAGGAAGAGTTCGGCACCTTCGGCGGCGCGCCGTTCGGCGCG
CTGATCGGCGACTACGAGATCTCGCGCCAGCCCGAGGACATGTACTTCATCGAGCAGATGTCGCACGTGGCGGCCGCCGC
GCACGCGCCGTTCATCGCCTCGGCCGCGCCCGAGCTGATCGGCCTCGAGTCGTTCGCCGACCTCGGCAAGCCGCGCGATC
TCGGCAAGGTGTTCGACACCGTCGAATACGCGAAGTGGAAATCGTTCCGCGACTCGGAGGATTCGCGCTACGTCGGCCTC
ACGCTGCCGCGTTTCCTCGGCCGCCTGCCGTTCCATCCCAAGGACGGCCAGATCGCCGAGAGCTTCAATTTCGTCGAGGA
CGTCGACGGCACCGATCATTCGAAATATCTGTGGTGCAACGCCGCCTGGGCGTTCGCGGCGCGCCTGACCGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTGGAGGGCGGCGGCCTGGTCGAGGATCTGCCCACCCATACCTTCAAG
ACCGACGACGGCGAGATCGCGCTGAAGTGCCCCACCGAGATCGCGATCACCGACCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTCCATTGCAAGAACTCCGACTACGCTGCCTTCTTCGCCGCCCAGTCGGTGCAGAAGCCCAAGA
AATACAACACCGACAGCGCGAACGCGAACGCGGTGCTGTCCGCTCAGCTCCAGTACATCTTCTCGGTATCGCGCATCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCCTCCGCGCAGAACGTGGAATCTTTCCTGAATCGCTG
GATCTCCCAGTACGTGCTGCTGGACGACAACGCGACGCAGGAACAGAAAGCGCAGTTTCCGCTGCGCGAAGCTTCGGTCC
AGGTGGCCGAGATTCCGGGCAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGGCCGCACTTCCAGCTCGACGAACTC
TCGATCTCGCTGCGCCTGGTCGCGGATCTGCCCAAGTCGGCAAATTCATGA