Detailed information of component protein


Summary

Component ID T6CP015762
Component protein type TssF
T6SS ID (Type) T6SS01265 experimental (Type i4b)
Strain Burkholderia glumae 336gr-1
Replicon chromosome
Sequence Protein sequence (613 a.a.); Nucleotide sequence (1839 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 3082..4920 (+)
NCBI ID -
GenBank AYPW01000191
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.7e-192 2..608
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-612 MEELLPYYERELSFLRRYSHEFARRYPKIAARLAMTGEHCDDPHVERMIESFALLGARINKKLDDDYPEFTEALVDVLYPHYLRPFPSCTIAQFTPTPAISQLTAPHRVARGTELKSRAIRGVQCQFRTAYDVTIAPIRISEARYSSIAVAPAATVLPGNATGVISITFESLAPQFDLGALGLDTLRAHLHGEQSFVAALADCLFINTLATYVEPERNGRWTALRRSPVTQAGFGEEDALIDYPARSHPAYRLLTEYFAFPDKFDFVDFDLAAMARRAGPCHRLTLHVVLSDVRSDSHVARLLDMLSATHLRLFCTPVVNLFKQNGEPIRVDHQSVSYPVIAEARRAFAYEVYSIDSVHLVRQTAHEEAVVEFRPFYSLHHGEAGHVGHYWFARRNEWVAQHSPGYETELSIVDIDFEPAAPQTDTLSLRLTCTNRDLPAGLATGLAGGDLFADGGADFGDITMLRRPTASVRFARGRAAHWRLISHLALNHVSLVADGLAPLKELLTLYDLRRSAVSMRHIDGLVAIEQRGSVQWLPGKPFATFVRGIEIRLTIDEEHFVGTSLAAFARMLDVFFGLYVHLNSFVQLIVVSKRTGEEIMRCQPRSGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9916 - -


  Protein sequence: 613 a.a.    

>T6CP015762 AYPW01000191:3082-4920 [Burkholderia glumae 336gr-1] [TssF]
MEELLPYYERELSFLRRYSHEFARRYPKIAARLAMTGEHCDDPHVERMIESFALLGARINKKLDDDYPEFTEALVDVLYP
HYLRPFPSCTIAQFTPTPAISQLTAPHRVARGTELKSRAIRGVQCQFRTAYDVTIAPIRISEARYSSIAVAPAATVLPGN
ATGVISITFESLAPQFDLGALGLDTLRAHLHGEQSFVAALADCLFINTLATYVEPERNGRWTALRRSPVTQAGFGEEDAL
IDYPARSHPAYRLLTEYFAFPDKFDFVDFDLAAMARRAGPCHRLTLHVVLSDVRSDSHVARLLDMLSATHLRLFCTPVVN
LFKQNGEPIRVDHQSVSYPVIAEARRAFAYEVYSIDSVHLVRQTAHEEAVVEFRPFYSLHHGEAGHVGHYWFARRNEWVA
QHSPGYETELSIVDIDFEPAAPQTDTLSLRLTCTNRDLPAGLATGLAGGDLFADGGADFGDITMLRRPTASVRFARGRAA
HWRLISHLALNHVSLVADGLAPLKELLTLYDLRRSAVSMRHIDGLVAIEQRGSVQWLPGKPFATFVRGIEIRLTIDEEHF
VGTSLAAFARMLDVFFGLYVHLNSFVQLIVVSKRTGEEIMRCQPRSGESILA*

  Nucleotide sequence: 1839 bp    

>T6CP015762 AYPW01000191:3082-4920 [Burkholderia glumae 336gr-1] [TssF]
ATGGAAGAGCTGCTGCCGTACTACGAGCGCGAACTGTCGTTTCTGCGGCGCTACTCGCACGAATTCGCGCGGCGCTATCC
GAAGATCGCGGCACGGCTCGCGATGACGGGCGAGCATTGCGACGACCCGCACGTCGAGCGCATGATCGAATCGTTCGCGC
TGCTGGGCGCGCGCATCAACAAGAAGCTCGACGACGACTATCCGGAATTCACCGAGGCGCTCGTCGATGTGCTCTATCCG
CACTACCTGCGGCCGTTCCCGTCCTGCACCATCGCGCAGTTCACGCCCACCCCGGCGATCTCGCAGTTGACCGCGCCGCA
TCGCGTGGCGCGCGGCACCGAGCTGAAGAGCCGCGCGATCCGCGGCGTGCAGTGCCAGTTCCGCACCGCCTATGACGTGA
CGATCGCGCCGATCCGCATCAGCGAGGCGCGCTATTCGTCGATCGCCGTCGCGCCGGCCGCCACCGTGCTGCCCGGCAAC
GCCACCGGCGTGATCTCGATCACCTTCGAGTCGCTCGCGCCGCAGTTCGACCTCGGCGCGCTGGGGCTCGACACGCTGCG
CGCGCACCTGCACGGCGAGCAGTCGTTCGTGGCCGCGCTGGCCGACTGCCTGTTCATCAACACGCTGGCCACCTACGTCG
AGCCCGAGCGCAACGGCCGCTGGACGGCATTGCGCCGTTCGCCCGTGACGCAGGCCGGCTTCGGCGAAGAGGACGCGCTG
ATCGACTACCCGGCGCGCTCGCATCCGGCCTACCGGCTGCTGACCGAATACTTCGCGTTTCCCGACAAGTTCGATTTCGT
CGATTTCGACCTGGCCGCGATGGCGCGCCGCGCGGGGCCGTGCCACCGCCTGACGCTGCACGTCGTGCTCAGCGACGTGC
GCAGCGATTCGCACGTGGCGCGCCTGCTCGACATGCTGAGCGCCACCCACCTGCGCCTGTTCTGCACGCCGGTGGTGAAC
CTGTTCAAGCAGAACGGCGAGCCGATCCGCGTCGATCACCAGAGCGTGTCGTACCCGGTGATCGCCGAGGCGCGCCGCGC
GTTCGCCTACGAGGTCTATTCGATCGACTCGGTGCATCTGGTGCGCCAGACCGCGCACGAGGAGGCGGTGGTGGAGTTCC
GGCCGTTCTACTCGCTGCATCACGGCGAGGCCGGCCATGTCGGCCACTACTGGTTCGCGCGCCGCAACGAGTGGGTCGCG
CAGCACAGCCCCGGCTACGAGACCGAGCTGTCGATCGTCGACATCGATTTCGAGCCGGCCGCGCCGCAGACCGACACGCT
GAGCCTGCGCCTGACCTGCACCAACCGCGATCTGCCGGCGGGGCTCGCCACCGGCCTGGCCGGCGGCGACCTGTTCGCCG
ACGGCGGCGCCGATTTCGGCGACATCACGATGCTGCGCCGGCCCACGGCGAGCGTGCGCTTCGCGCGCGGGCGCGCCGCG
CACTGGCGGCTGATCTCGCATCTCGCGCTGAACCACGTCTCGCTGGTGGCCGACGGCCTCGCGCCGCTCAAGGAACTGCT
CACGCTCTACGATCTGCGCCGCTCGGCGGTCTCGATGCGCCACATCGACGGGCTGGTCGCGATCGAGCAGCGCGGCTCCG
TGCAGTGGCTGCCCGGCAAGCCGTTCGCGACCTTCGTGCGCGGCATCGAGATTCGCCTGACGATCGACGAGGAACACTTC
GTCGGCACCAGCCTCGCCGCATTCGCGCGCATGCTCGACGTGTTCTTCGGGCTGTACGTCCACCTCAACAGCTTTGTGCA
ACTGATCGTCGTGTCCAAGCGCACCGGCGAGGAGATCATGCGATGCCAACCGCGAAGCGGCGAATCGATCCTGGCGTAG