Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00044  |
| T6SS type | Type i5 |
| Strain | Vibrio parahaemolyticus RIMD 2210633 |
| Replicon (RefSeq) | chromosome II (NC_004605) |
| Location | 1074208..1108114 |
| Function | anti-eukaryotic; effector translocation; adherence |
| Comment | Adhesion to cultured cell monolayers. |
| References | [1] Yu Y et al (2012) VPA1045 and VPA1049 of Vibrio parahaemolyticus regulate translocation of Hcp2. Wei Sheng Wu Xue Bao. 52(8):954-61. [PudMed:23173431] [2] Yu Y et al (2015) VgrG2 of type VI secretion system 2 of Vibrio parahaemolyticus induces autophagy in macrophages. Front Microbiol. 0.366666667. [PudMed:25784905] [3] Ma L et al (2012) Expression of the Type VI Secretion System 1 Component Hcp1 Is Indirectly Repressed by OpaR in Vibrio parahaemolyticus. Scientific World Journal. 2012:982140. [PudMed:22924031] [4] Yu Y et al (2012) Putative type VI secretion systems of Vibrio parahaemolyticus contribute to adhesion to cultured cell monolayers. Arch Microbiol. 194(10):827-35. [PudMed:22535222] [5] Salomon D et al (2013) Vibrio parahaemolyticus Type VI Secretion System 1 Is Activated in Marine Conditions to Target Bacteria, and Is Differentially Regulated from System 2. PLoS One. 8(4):e61086. [PudMed:23613791] [6] Wang L et al (2013) Cell Density- and Quorum Sensing-Dependent Expression of Type VI Secretion System 2 in Vibrio parahaemolyticus. PLoS One. 8(8):e73363. [PudMed:23977385] [7] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| VP_RS20045 | 1069624..1070757 | - | 1134 | WP_005480347.1 | multidrug effflux MFS transporter | ||
| VP_RS20050 | 1070897..1071676 | + | 780 | WP_011106404.1 | helix-turn-helix transcriptional regulator | ||
| VP_RS20055 | 1071695..1072216 | - | 522 | WP_005463837.1 | lipocalin family protein | ||
| VP_RS20060 | 1072272..1072799 | - | 528 | WP_005463834.1 | phosphoglycerate mutase family protein | ||
| VP_RS20065 | 1072830..1073354 | - | 525 | WP_005480324.1 | AAA family ATPase | ||
| VP_RS20070 | 1073763..1074143 | + | 381 | WP_005480328.1 | pyruvate dehydrogenase | ||
| VP_RS20075 | 1074208..1077264 | - | 3057 | WP_005480361.1 | SMC family ATPase | ||
| VP_RS20080 | 1077274..1078407 | - | 1134 | WP_005480232.1 | exonuclease SbcCD subunit D | ||
| VP_RS20085 | 1078504..1079346 | - | 843 | WP_005480244.1 | hypothetical protein | ||
| T6CP011352 | PAAR | VP_RS20090 | 1079347..1079637 | - | 291 | WP_005499010.1 | PAAR domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.
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Showing 1 to 10 of 10 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF00061 | VP_RS20100 | - | - | Vibrio parahaemolyticus RIMD 2210633 | chromosome (NC_004605) | 1081544..1082023 (-) | 28900882 |
Showing 1 to 1 of 1 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||