Detailed information of regulator
|Regulatory pathway (from literatures)||carbon storage regulatory pathway|
|KEGG pathway (determined by BlastKOALA)||Two-component system (map02020); Biofilm formation - Vibrio cholerae (map05111); Biofilm formation - Pseudomonas aeruginosa (map02025); Biofilm formation - Escherichia coli (map02026)|
|Related T6SS||T6SS00043 (Type i1); T6SS00044 (Type i5)|
|Strain||Vibrio parahaemolyticus RIMD 2210633|
|Sequence||Protein sequence (66 a.a.); Nucleotide sequence (198 bp)|
|Description||Simultaneous deletion of all three CrsB ncRNA significantly increased the expression level of genes in T6SSs, indicating that CsrB negatively regulates T6SSs. Deletion of csrA dramatically reduced the expression level of T6SSs as examined by qRT‐PCR or Western blot analysis suggesting a negative regulatory cascade of T6SSs by CsrB through CrsA.|
External database links
|Target||Regulation (↓/↑)||Target sequence|
|Hcp and vgrG expression and secretion||↓||-|
Pfam domain hit(s) of regulator
|Domain||Pfam ID||E-value||Aligned region|
- Transmembrane helices are predicted using TMHMM 2.0 software.
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
|Prediction||Probability||Cleavage site||Signal peptide sequence|
Protein sequence of regulator: 66 a.a. .
Nucleotide sequence of regulator: 198 bp .