Detailed information of regulator


Summary

Regulator ID REG0103 experimental
Regulator type ncRNA
Regulatory pathway (from literatures) carbon storage regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00043 experimental (Type i1); T6SS00044 experimental (Type i5)
Strain Vibrio parahaemolyticus RIMD 2210633
Replicon chromosome
Sequence Nucleotide sequence (308 bp)
Description Simultaneous deletion of all three CrsB ncRNA significantly increased the expression level of genes in T6SSs, indicating that CsrB negatively regulates T6SSs. Deletion of csrA dramatically reduced the expression level of T6SSs as examined by qRT‐PCR or Western blot analysis suggesting a negative regulatory cascade of T6SSs by CsrB through CrsA.
Reference

External database links

Locus tag (Gene) CsrB1
Coordinates (Strand) 2438728..2439035 (+)
NCBI ID -
RefSeq NC_004603

  Target
Target Regulation (↓/↑) Target sequence
VP_RS12395 (CsrA) -

  Nucleotide sequence of regulator: 308 bp    .

>REG0103 NC_004603:2438728-2439035 [Vibrio parahaemolyticus RIMD 2210633]
GAAAATAAGAAAGACCCCGACACGAATGTATCGGGGTCATGGTCTTACTCGCAGCAGTCCGGCTACTAAATAGTGCTCCA
TGCATCATCCATAATAGTGGCTGATTCCGTCAGCTCAGTCCTTACGTCGCCGTCCTAGCGGTGTCCTTATCATCCTGATA
GCTAACATTCCCCGTTAGCGCACATCACTTGTTCCTTGAGCGGTGTCCCTTGCATCTTCCTGATGCTGTCCATAACCTCA
ATCCTATGAGGGGTCCATTGTCTATCCTTAGTCATCAACATCCTATTGATGATTGCTTCCTTACAATG