Detailed information of regulator
Summary
| Regulator ID | REG0103  |
| Regulator type | ncRNA |
| Regulatory pathway (from literatures) | carbon storage regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS00043 (Type i1); T6SS00044 (Type i5) |
| Strain | Vibrio parahaemolyticus RIMD 2210633 |
| Replicon | chromosome |
| Sequence | Nucleotide sequence (308 bp) |
| Description | Simultaneous deletion of all three CrsB ncRNA significantly increased the expression level of genes in T6SSs, indicating that CsrB negatively regulates T6SSs. Deletion of csrA dramatically reduced the expression level of T6SSs as examined by qRT‐PCR or Western blot analysis suggesting a negative regulatory cascade of T6SSs by CsrB through CrsA. |
| Reference |
External database links
| Locus tag (Gene) | CsrB1 |
| Coordinates (Strand) | 2438728..2439035 (+) |
| NCBI ID | - |
| RefSeq | NC_004603 |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| VP_RS12395 (CsrA) | ↑ | - |
Nucleotide sequence of regulator: 308 bp .
>REG0103 NC_004603:2438728-2439035 [Vibrio parahaemolyticus RIMD 2210633]
GAAAATAAGAAAGACCCCGACACGAATGTATCGGGGTCATGGTCTTACTCGCAGCAGTCCGGCTACTAAATAGTGCTCCA
TGCATCATCCATAATAGTGGCTGATTCCGTCAGCTCAGTCCTTACGTCGCCGTCCTAGCGGTGTCCTTATCATCCTGATA
GCTAACATTCCCCGTTAGCGCACATCACTTGTTCCTTGAGCGGTGTCCCTTGCATCTTCCTGATGCTGTCCATAACCTCA
ATCCTATGAGGGGTCCATTGTCTATCCTTAGTCATCAACATCCTATTGATGATTGCTTCCTTACAATG
GAAAATAAGAAAGACCCCGACACGAATGTATCGGGGTCATGGTCTTACTCGCAGCAGTCCGGCTACTAAATAGTGCTCCA
TGCATCATCCATAATAGTGGCTGATTCCGTCAGCTCAGTCCTTACGTCGCCGTCCTAGCGGTGTCCTTATCATCCTGATA
GCTAACATTCCCCGTTAGCGCACATCACTTGTTCCTTGAGCGGTGTCCCTTGCATCTTCCTGATGCTGTCCATAACCTCA
ATCCTATGAGGGGTCCATTGTCTATCCTTAGTCATCAACATCCTATTGATGATTGCTTCCTTACAATG