Detailed information of regulator


Summary

Regulator ID REG0100 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS-HK
KEGG pathway (determined by BlastKOALA) Two-component system (map02020); Biofilm formation - Vibrio cholerae (map05111); Biofilm formation - Pseudomonas aeruginosa (map02025); Biofilm formation - Escherichia coli (map02026)
Related T6SS T6SS00043 experimental (Type i1); T6SS00044 experimental (Type i5)
Strain Vibrio parahaemolyticus RIMD 2210633
Replicon chromosome
Sequence Protein sequence (933 a.a.); Nucleotide sequence (2799 bp)
Description Deletion of uvrY or barA compromised the expression of selected genes from both two T6SSs by 2 to 10‐fold at 23°C.
Reference
External database links

Locus tag (Gene) VP_RS12495 (barA)
Coordinates (Strand) 2712492..2715290 (+)
NCBI ID 491625032
RefSeq NC_004603
Uniprot ID Q87LP4_VIBPA
KEGG ID vpa:VP2567
KEGG pathway (determined by BlastKOALA) map02020; map05111; map02025; map02026
PDB ID -
  Target
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Target
Regulation (↓/↑)
Target sequence
Hcp expression and secretion↓-
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Pfam domain hit(s) of regulator

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Domain
Pfam ID
E-value
Aligned region
sCache_4PF09984.118.1e-5431..175
HATPase_cPF02518.283.6e-30402..516
Response_regPF00072.261.1e-28670..780
HisKAPF00512.275.1e-20291..355
HptPF01627.257.2e-11840..919
HAMP_2PF18947.28.7e-08197..242
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-9MTRYGLRAR
Transmembrane helix10-32VITLTLAPTLIIGLLLSGFFSFN
Inside33-174RYQDLEKQVITTGNSIIEPLAIASESHLLAESREAVRRLISYAHRKNSKLVRSIAVFDEHHELFVTSNFHPNFEALMFPKDKPIPKLGNSEIYENSLILRVPILSEGHYLSELSNENQGTKAIGYIAVEMDLSSLRLQQYQE
Transmembrane helix175-197VFSAFLVLILGLGLASVFASRLM
Outside198-932HDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNSTEMPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLPENEEHYDYVLLNLAANQTYDEQSVAAWIEQAKRMAPSVIMGTPSTELALADQIMTEHQIQCLTKPLSRRKLLQSLINEHVEAPQAITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVNLATEKKYDLIFMDIQMPLMDGVTACQNIKELELNKDTPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIGKVAPSYVDEPESEAPATAENTQPDVIIDWQAALKQSANKEDLAKDMLRMLIDFIPEVEEVVDHALEQDDYSREELIHVIHKLHGSSSYCGVPRLKSLCATLEHALRSGASIEEIEPEMFELQDEMIKVTTTAKLYLEQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9405--


  Protein sequence of regulator: 933 a.a.    .

>REG0100 NC_004603:2712492-2715290 [Vibrio parahaemolyticus RIMD 2210633]
MTRYGLRARVITLTLAPTLIIGLLLSGFFSFNRYQDLEKQVITTGNSIIEPLAIASESHLLAESREAVRRLISYAHRKNS
KLVRSIAVFDEHHELFVTSNFHPNFEALMFPKDKPIPKLGNSEIYENSLILRVPILSEGHYLSELSNENQGTKAIGYIAV
EMDLSSLRLQQYQEVFSAFLVLILGLGLASVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINA
MAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ
LSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL
VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT
GLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNSTEMPMSDLIEVELLTGKQLLLVEPNMQAASVTQQILSQEGIL
VTYRSSLPENEEHYDYVLLNLAANQTYDEQSVAAWIEQAKRMAPSVIMGTPSTELALADQIMTEHQIQCLTKPLSRRKLL
QSLINEHVEAPQAITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVNLATEKKYDLIFMDIQ
MPLMDGVTACQNIKELELNKDTPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIGKVAPSY
VDEPESEAPATAENTQPDVIIDWQAALKQSANKEDLAKDMLRMLIDFIPEVEEVVDHALEQDDYSREELIHVIHKLHGSS
SYCGVPRLKSLCATLEHALRSGASIEEIEPEMFELQDEMIKVTTTAKLYLEQ*

  Nucleotide sequence of regulator: 2799 bp    .

>REG0100 NC_004603:2712492-2715290 [Vibrio parahaemolyticus RIMD 2210633]
ATGACCAGATATGGCTTACGAGCACGTGTAATTACGCTGACTCTCGCTCCCACTCTCATTATTGGTTTATTACTGAGCGG
CTTTTTCTCCTTTAATCGCTATCAGGACCTAGAGAAACAAGTTATCACTACGGGCAATAGCATCATTGAACCTCTTGCGA
TCGCCAGTGAATCTCACCTACTTGCTGAAAGCCGTGAAGCCGTACGTCGCCTGATTAGCTACGCGCACCGTAAAAATTCC
AAACTCGTTCGCAGTATTGCCGTATTTGATGAGCACCATGAACTGTTCGTCACGTCAAACTTCCATCCTAATTTTGAAGC
TCTGATGTTCCCAAAAGATAAGCCGATCCCAAAGCTGGGAAATTCGGAAATCTATGAGAACTCCCTGATCCTGCGTGTGC
CGATCTTGTCGGAAGGACACTATTTATCAGAACTGTCTAACGAAAACCAAGGCACGAAAGCCATTGGCTACATCGCGGTA
GAAATGGATCTTTCTTCTCTGCGCTTACAGCAATACCAAGAAGTCTTCTCCGCTTTCCTTGTTTTGATCCTTGGTCTTGG
GCTTGCGAGCGTGTTTGCTTCCCGCTTAATGCATGATGTTACCCAACCAATCACGCACATGAAAAACGTCGTTGATCGCA
TTCGTCGTGGTCACTTGGATGTGCGTATCGAAGGCAAAATGCACGGCGAGTTAGACCAACTGAAAAACGGCATCAACGCC
ATGGCGGTTTCGCTATCGGAATACCACGTCGAGATGCAGCACAGTATAGACCAAGCCACGTCAGACCTACGCGAAACCTT
GGAACAGTTAGAAATTCAAAACGTTGAGCTCGATATTGCGAAGAAGCGCGCACAAGAAGCCGCACGTGTGAAATCAGAAT
TTTTGGCCAATATGTCGCACGAATTACGTACGCCATTAAATGGTGTAATTGGCTTTACTCGTCAAATGCTCAAAACGCAG
CTTTCTAATAGCCAAACCGACTACTTGCAAACCATTGAGAAGTCCGCAAACAACCTACTGAACATCATCAATGACATTCT
CGATTTCTCGAAATTGGAAGCCGGTAAGTTGGCGTTGGAAAACATTCCGTTTGATTTCCGTGAAAGCTTAGAAGAAGTAA
TCAACCTACAAGCCACCAGCGCGCATGAGAAAGGTCTGGAGATCACCTTGAAAGTGGATCCGAAGATCCCGCCAGGTCTA
GTCGGAGACCCGCTACGTATCCAACAAATTTTGACTAACTTGGTGGGGAACTCTATTAAGTTTACTGAGCGCGGAAACAT
CGATGTTAGCGTCGAGATGCGTTCACAAGCAGGTGACTCGGTTGAGCTGCAATTTATGGTGCGAGACACCGGTATCGGTA
TTTCAGAGCGTCAACAAGCGCAGTTATTCCAAGCATTCAGCCAAGCGGATGCCAGCATATCTCGTCGATATGGTGGTACG
GGGCTTGGCTTAGTCATCACCCAGAAACTGGTAAGTCAGATGGGCGGCGAAATCAGTTTGACCAGTCGTCTTCACCAAGG
TTCGACATTCTGGTTTACGCTTCGCCTCAACTCGACAGAAATGCCAATGAGCGATCTGATTGAAGTCGAGCTACTAACGG
GCAAACAGTTGCTGTTGGTAGAACCAAACATGCAAGCGGCATCGGTGACTCAGCAGATCTTGAGTCAAGAAGGTATTCTC
GTGACCTATCGTTCTTCCTTACCAGAGAACGAAGAGCACTACGATTACGTATTGCTGAACTTGGCAGCCAACCAAACTTA
TGACGAGCAATCAGTCGCTGCTTGGATTGAGCAAGCGAAGCGCATGGCACCAAGTGTCATCATGGGTACACCGAGCACCG
AATTAGCGCTTGCCGACCAAATCATGACCGAGCATCAAATCCAGTGCTTAACCAAACCGCTATCACGCCGTAAGCTGCTG
CAAAGTTTGATCAATGAACATGTTGAAGCCCCTCAAGCTATTACCGCTCCTGTTGAAACAGAAGAAAGCGAACGACTGCC
ACTGACGGTGCTCGCGGTGGATGATAACCCTGCAAACCTAAAACTGATTTCAGCACTATTGAAAGAAAGGGTTGAAACCG
TAACGGCTTGTAGCAATGGTCAGCAAGCCGTAAATCTCGCTACCGAGAAGAAATACGACCTGATCTTTATGGACATCCAA
ATGCCATTAATGGATGGCGTGACCGCTTGTCAGAACATCAAAGAGCTTGAGTTAAACAAAGACACGCCAGTGATCGCCGT
TACTGCGCACGCCATGGCTGGGGAGCGCGACCGCCTACTCGCCGCAGGTATGGATGATTACCTCACCAAACCAATTGAAG
AGCATGTACTGCAACAAGTGTTGGTCCACTGGAATCCGAATACCTGTACAGAAAGCATAGGGAAAGTTGCGCCGTCCTAC
GTCGATGAACCAGAAAGTGAAGCTCCTGCTACAGCTGAAAATACACAACCTGATGTGATTATTGACTGGCAAGCCGCATT
GAAACAGAGCGCTAATAAGGAAGACTTAGCCAAAGATATGCTGCGTATGTTGATCGATTTCATTCCAGAAGTAGAAGAAG
TTGTCGACCACGCACTTGAGCAAGACGATTATTCGCGTGAAGAGTTAATTCATGTGATCCACAAACTGCACGGCAGTAGC
TCTTATTGTGGCGTACCAAGGCTAAAATCTCTCTGTGCTACGCTTGAACACGCACTTCGTTCAGGAGCCAGCATTGAAGA
AATTGAACCTGAAATGTTTGAACTGCAAGATGAAATGATTAAGGTCACCACCACTGCAAAACTTTATCTAGAGCAGTAG