Detailed information of component protein


Summary

Component ID T6CP000378
Component protein type TssJ
T6SS ID (Type) T6SS00044 experimental (Type i5)
Strain Vibrio parahaemolyticus RIMD 2210633
Replicon chromosome II
Sequence Protein sequence (152 a.a.); Nucleotide sequence (456 bp)
Reference
[1] Ma L, Zhang Y, Yan X, et al. Expression of the type VI secretion system 1 component Hcp1 is indirectly repressed by OpaR in Vibrio parahaemolyticus. ScientificWorldJournal. 2012;2012:982140. doi: 10.1100/2012/982140. Epub 2012 Jul 31. PMID: 22924031
[2] Yu Y, Yang H, Li J, et al. Putative type VI secretion systems of Vibrio parahaemolyticus contribute to adhesion to cultured cell monolayers. Arch Microbiol. 2012 Oct;194(10):827-35. Epub 2012 Apr 26. PMID: 22535222
[3] Salomon D, Gonzalez H, Updegraff BL, et al. Vibrio parahaemolyticus type VI secretion system 1 is activated in marine conditions to target bacteria, and is differentially regulated from system 2. PLoS One. 2013 Apr 16;8(4):e61086. doi: 10.1371/journal.pone.0061086. Print 2013. PMID: 23613791
[4] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603
[5] [Article in Chinese] [VPA1045 and VPA1049 of Vibrio parahaemolyticus regulate translocation of Hcp2]. Wei Sheng Wu Xue Bao. 2012 Aug 4;52(8):954-61. PMID: 23173431
[6] Wang L, Zhou D, Mao P, et al. Cell density- and quorum sensing-dependent expression of type VI secretion system 2 in Vibrio parahaemolyticus. PLoS One. 2013 Aug 15;8(8):e73363. doi: 10.1371/journal.pone.0073363. eCollection 2013. PMID: 23977385
[7] Yu Y, Fang L, Zhang Y, et al. VgrG2 of type VI secretion system 2 of Vibrio parahaemolyticus induces autophagy in macrophages. Front Microbiol. 2015 Mar 2;6:168. doi: 10.3389/fmicb.2015.00168. eCollection 2015. PMID: 25784905
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VP_RS20175
Coordinate (Strand) 1101255..1101710 (-)
NCBI ID WP_005463795.1
RefSeq NC_004605
Uniprot ID Q87HC3_VIBPA, A0A2R9VI00_VIBPH
KEGG ID vpa:VPA1042
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 5.7e-39 30..145
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 VKQIYK
Transmembrane helix 7-26 SFLLFIFLVLMGCSAANLVV
Outside 27-151 DPYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSLVVQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9804 pos: 18-19. LMG-CS. VKQIYKSFLLFIFLVLMG


  Protein sequence: 152 a.a.    

>T6CP000378 NC_004605:c1101710-1101255 [Vibrio parahaemolyticus RIMD 2210633] [TssJ]
VKQIYKSFLLFIFLVLMGCSAANLVVDPYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVL
GPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSLVVQ*

  Nucleotide sequence: 456 bp    

>T6CP000378 NC_004605:c1101710-1101255 [Vibrio parahaemolyticus RIMD 2210633] [TssJ]
GTGAAACAAATTTATAAATCATTTTTGCTGTTTATATTTTTAGTATTAATGGGATGCTCCGCCGCTAATTTAGTGGTCGA
CCCATATGCGGATTTAGAAATAACGGCAAATCATAATATCAACCCTGACTCGAATGGAAGACCATCACCAGTTGTTGTAT
ATGTATTTGAGCTTACATCAAATACACTGTTTGAGAGCCAAGATTTTTTCTCTATTTATGAGGAGCATGAAAAAGTACTC
GGTCCAGACTTGGTGAATAAATATGAAATATCTTTGACACCAGGCCAAAAAGAAATCTACCAAGCTAGTATGTCTCCTAA
AACAGAATATTTGGGTATCGTAGCCGCGTTTCGCGATATTGAGAATTCAAATTGGCGACAAGTCATTAAAGTAGATAAGA
CGGGTTACAACACTTATCAAATCTCGTTAGAAGATCTGTCTTTGGTCGTACAATAA