Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01013  |
| T6SS type | Type i3 |
| Strain | Citrobacter rodentium DBS100 |
| Replicon (GenBank) | chromosome (CP038008) |
| Location | 2124567..2151602 |
| Function | - |
| Comment | - |
| References | [1] Gueguen E et al (2014) Transcriptional Frameshifting Rescues Citrobacter rodentium Type VI Secretion by the Production of Two Length Variants from the Prematurely Interrupted tssM Gene. PLoS Genet. 10(12):e1004869. [PudMed:25474156] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| E2R62_10370 | 2119755..2120081 | + | 327 | 1609533856 | hypothetical protein | ||
| E2R62_10375 | 2120095..2120934 | + | 840 | 1609536641 | MBL fold metallo-hydrolase | ||
| E2R62_10380 | 2121429..2124338 | - | 2910 | 1609533857 | autotransporter outer membrane beta-barrel domain-containing protein | ||
| T6CP013168 | TssE | E2R62_10385 (tssE) | 2124567..2125070 | - | 504 | 1609533858 | type VI secretion system baseplate subunit TssE |
| E2R62_10390 | 2125057..2125854 | - | 798 | 1609533859 | ImpE family T6SS protein Cts1E | ||
| E2R62_10395 | 2125872..2126735 | - | 864 | 1609533860 | TagK domain-containing protein | ||
| E2R62_10400 | 2126719..2126982 | - | 264 | 1609533861 | hypothetical protein | ||
| T6CP013169 | TssI | E2R62_10405 (tssI) | 2127043..2129352 | - | 2310 | 1609536642 | type VI secretion system tip protein VgrG |
| E2R62_10410 | 2129390..2130043 | - | 654 | 1609533862 | T6SS protein Cts1T | ||
| E2R62_10415 (tssM) | 2130058..2133850 | - | 3793 | pseudogene | type VI secretion system membrane subunit TssM | ||
| T6CP013170 | TssL | E2R62_10420 (tssL) | 2133898..2135253 | - | 1356 | 1609533863 | type VI secretion system protein TssL |
| T6CP013171 | TssK | E2R62_10425 (tssK) | 2135253..2136599 | - | 1347 | 1609533864 | type VI secretion system baseplate subunit TssK |
| T6CP013172 | TssJ | E2R62_10430 (tssJ) | 2136603..2137163 | - | 561 | 1609533865 | type VI secretion system lipoprotein TssJ |
| T6CP013173 | TssD | E2R62_10435 | 2137221..2137706 | - | 486 | 1609533866 | Hcp1 family type VI secretion system effector |
| T6CP013174 | TssC | E2R62_10440 (tssC) | 2137866..2139365 | - | 1500 | 1609533867 | type VI secretion system contractile sheath large subunit |
| T6CP013175 | TssB | E2R62_10445 (tssB) | 2139387..2139905 | - | 519 | 1609533868 | type VI secretion system contractile sheath small subunit |
| E2R62_10450 | 2139996..2140544 | - | 549 | 1609533869 | type 1 fimbrial protein | ||
| E2R62_10455 | 2140535..2143132 | - | 2598 | 1609533870 | fimbrial biogenesis outer membrane usher protein | ||
| E2R62_10460 | 2143169..2143924 | - | 756 | 1609533871 | pilus assembly protein | ||
| E2R62_10465 | 2144010..2144549 | - | 540 | 1609533872 | type 1 fimbrial protein | ||
| T6CP013176 | TssH | E2R62_10470 (tssH) | 2144634..2147324 | - | 2691 | 1609533873 | type VI secretion system ATPase TssH |
| T6CP013177 | TssF | E2R62_10475 (tssF) | 2147627..2149507 | + | 1881 | 1609533874 | type VI secretion system baseplate subunit TssF |
| T6CP013178 | TssG | E2R62_10480 (tssG) | 2149504..2150535 | + | 1032 | 1609533875 | type VI secretion system baseplate subunit TssG |
| T6CP013179 | TssA | E2R62_10485 | 2150532..2151602 | + | 1071 | 1609533876 | hypothetical protein |
| E2R62_10490 | 2151606..2152592 | + | 987 | 1609533877 | fimbrial protein | ||
| E2R62_10495 | 2152618..2153964 | + | 1347 | 1609533878 | glycosyltransferase | ||
| E2R62_10500 | 2153958..2155742 | + | 1785 | 1609536643 | OmpA family protein | ||
| E2R62_10505 | 2155768..2156256 | + | 489 | 1609533879 | DUF1795 domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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